| MDC | Microbiota-disrupting chemicals |
| NGP | Next-generation probiotics |
| GIT | Gastrointestinal tract |
| PCOS | Polycystic ovary syndrome |
| FAO | Food and Agriculture Organization of the United Nations |
| WHO | World Health Organization |
| ICT | Interventional clinical trials |
| PCS | Preclinical studies |
| DC | Dendritic cells |
| IL | Interleukin |
| LPS | Lipopolysaccharide |
| TLR2 | Toll-like receptor 2 |
| TNF | Tumor necrosis factor |
| WGS | Whole genome sequencing |
| NGS | New-generation sequencing |
| AN | Anorexia nervosa |
| HC | Healthy control |
| HL | Hyperlipidemia |
| HT | Hypertension |
| LH | Lean healthy |
| MetS | Metabolic syndrome |
| MHNO | Metabolically healthy non-obese |
| MHO | Metabolically healthy obese |
| MUNO | Metabolically unhealthy non-obese |
| MUO | Metabolically unhealthy obese |
| NAFLD | Non-alcoholic fatty liver disease |
| NASH | Non-alcoholic steatohepatitis |
| OB | Obese |
| OBH | Obese healthy |
| OBT2D | Obese type 2 diabetes |
| OW | Overweight |
| RISK1 | Patients with only one disease |
| RISK2 | Patients with two disease |
| RISK3 | Patients with three disease |
| SS | Simple steatosis |
| T1D | Type 1 diabetes |
| T2D | Type 2 diabetes |
| TSNO | Tsumura Suzuki obese diabetes mice |
| TSOD | Tsumura Suzuki non obesity mice |
| BPA | Bisphenol A |
| BPS | Bisphenol S |
| YCFA | Yeast-extract-casein hydrolysate-fatty acids |
| GAM | Gifu anaerobic medium |
| BHI | Brain–heart infusion |
| EMB | Eosin methylene blue |
| LBS | Lactobacillus selection |
| GMM | Gut microbiota medium |
| MRS | Man, Rogosa, and Sharpe |
| RNA | Ribonucleic acid |
| rRNA | Ribosomal ribonucleic acid |
| DNA | Deoxyribonucleic acid |
| OTU | Operational taxonomic unit |
| EU | European Union |
| Ph. Eur. | European Pharmacopoeia |
| US | United States |
| GRAS | Generally recognized as safe |
| FDA | Food and Drug Administration |
| EFSA | European Food Safety Authority |
| QPS | Qualified presumption of safety |
| EMA | European Medicines Agency |
| MHLW | Ministry of Health and Welfare |
| FOSHU | Food for specified health use |
| FUFOSE | Functional food science in Europe |
| SFDA | State Food and Drug Administration |
| DSHEA | Dietary Supplement Health and Education Act |
| BLA | Biologic license application |
| CFIA | The Canadian Food Inspection Agency |
| GMP | Good manufacturing practice |
| CFU | Colony-forming units |
| OA | Open access |