| BN-dataset | Balanced Negatives-dataset |
| DB-Database | DrugBank Database |
| CV | Cross-Validation |
| DTI | Drug-Target Interaction |
| FP | False Positive |
| FPR | False Positive Rate |
| (m,p) | (molecule, protein) |
| LAkernel | Local Alignement kernel |
| ML | Machine Learning |
| PU learning | Positive-Unlabelled learning |
| RF | Random Forests (algorithm) |
| ROC-AUC | Area Under the Receiver Operating Characteristic curve |
| RN-dataset | Random Negatives-dataset |
| SVM | Support Vector Machine (algorithm) |