Alt.	Alternative
AmpR	Ampicillin resistance
ASE	Alternative splicing events
att	Attachment site
BAC	Bacterial artificial chromosome
BBP	Branch point-binding protein
bps	Base pairs
ccd	Control of cell death
CmR	Chloramphenicol resistance
ESE	Exonic splicing enhancer
ESS	Exonic splicing silencer
GFI	Genomic fragment of interest
hnRNP	Heterogeneous nuclear ribonucleoprotein
IHF	Integration host factor
Int	Integrase
ISE	Intronic splicing enhancer
ISS	Intronic splicing silencer
N/A	Not available
NGS	Next-generation sequencing
pMEIs	Polymorphic mobile element insertions
PPT	Polypyrimidine tract
RBP	RNA-binding protein
RE	Restriction enzyme
RT-PCR	Reverse transcriptase PCR
RT-qPCR	Quantitative reverse transcriptase PCR
snoRNA	Small nucleolar RNA
SNP	Single-nucleotide polymorphism
snRNP	Small nuclear ribonucleoprotein
SRSF	Serine/arginine-rich splicing factor
U2AF	U2 auxiliary factor
Xis	Excisionase