Experimental models: organisms/strains |
|
GlyT2-Cre transgenic mice |
Donated by László Acsády |
N/A |
GlyT2-GFP transgenic mice |
Donated by Zoltan Nusser |
N/A |
|
Bacterial and virus strains |
|
AAV9.CAG.flex.GCaMP6f.WPRE.SV40 |
Addgene |
Cat # 100835-AAV9; RRID:Addgene_100837 |
|
Chemicals, peptides, and recombinant proteins |
|
Red fluorescent beads |
Thermofisher |
Cat # F8858 |
Rabbit Anti-Neurogranin primary antibody (1:500) |
EMD Millipore - AB5620 |
RRID:AB_91937
|
Goat Anti-Rabbit IgG - Alexa 568 (1:500) |
Abcam - ab175471 |
RRID:AB_2576207
|
Normal Goat Serum |
Sigma-Aldrich |
NS02L |
|
Deposited data |
|
Raw and analyzed data |
This paper |
https://doi.org/10.5522/04/14364845 |
|
Software and algorithms |
|
Microscopy software |
Nadella et al., 2016 |
https://github.com/SilverLabUCL/SilverLab-Microscope-Software |
Custom data-analysis scripts |
This paper |
https://github.com/harshagurnani/GoCPopImaging |
Computational modeling and analysis |
This paper |
https://github.com/harshagurnani/GoC_Network_Sim_BehInputs |
Custom scripts for preprocessing raw acquisition data |
This paper |
https://github.com/harshagurnani/CaDataAnalysis_GoC |
DeepLabCut: Markerless tracking and pose estimation of animals |
Mathis et al., 2018 |
https://github.com/DeepLabCut/DeepLabCut |
MLSpike: Spike-event extraction from calcium imaging data |
Deneux et al., 2016 |
https://github.com/MLspike/spikes |
ImageJ (Fiji), Image processing software |
Schindelin et al., 2012 |
https://imagej.net/Fiji |