. 2021 May 13;11(5):1392. doi: 10.3390/ani11051392

Table 1.

Summary of informative SNPs in the significant 1-Mb windows associated with DEBV phenotypes (MY, FY, PY, and SCS) based on BayesC.

PHENOTYPE (DEBV) ^a	BTA (Mb) ^b	GV (%) ^c	Informative SNP	Rs Number	Position ^d	SNP Effect	Model Frequency	Region Annotation	Gene Annotation
MY	14 (1)	2.60	AX-371638654	rs211016627	1,807,655	23.9100	0.1845	Intron	HSF1
			AX-311625833	rs384957047	1,793,616	−22.1900	0.1717	Upstream gene	DGAT1 (dist = 1735)
			AX-311625843	rs211223469	1,799,476	−20.4900	0.1617	Intron	DGAT1
			AX-419656711	rs211282745	1,805,963	−17.5500	0.1415	Downstream gene	HSF1 (dist = 118)
			AX-311625845	rs209876151	1,800,439	−15.9000	0.1300	Intron	DGAT1
			AX-371657011	rs208640292	1,806,875	12.8000	0.1095	Synonymous	HSF1
			AX-419792758	rs207655744	1,806,340	12.3300	0.1057	3 prime UTR	HSF1
	6 (88)	1.03	AX-185121607	rs110775601	88,952,089	78.4400	0.6617	Intergenic	NPFFR2 (dist = 100,121)
	6 (88)	1.03	AX-106735408	rs110527224	88,592,295	17.9900	0.1741	Intergenic	SLC4A4 (dist = 54,249)
	8 (0)	0.78	AX-419764649	rs721532493	887,406	−1.0640	0.0183	Intron	PALLD
	23 (24)	0.77	AX-419655926	rs380223715	24,021,950	−1.3030	0.0180	Intron	PKHD1
	23 (23)	0.63	AX-419634159	rs517703887	23,999,941	−1.0560	0.0169	Intron	PKHD1
	7 (73)	0.51	AX-169404932	rs135477609	73,561,312	4.0460	0.0477	Intergenic	ADRA1B (dist = 49,805)
	8 (69)	0.50	AX-419751453	rs524049037	69,514,127	−1.7210	0.0251	Intron	GFRA2
FY	14 (1)	5.92	AX-429953677	rs110812136	1,991,225	1.9290	0.3670	Intron	SPATC1
			AX-115099034	rs109421300	1,801,116	1.5190	0.2793	Intron	DGAT1
			AX-371657011	rs208640292	1,806,875	−1.1010	0.2097	Synonymous	HSF1
			AX-419793247	rs208317364	1,800,399	−0.9766	0.1922	Intron	DGAT1
			AX-419656711	rs211282745	1,805,963	0.8508	0.1682	Downstream gene	HSF1 (dist = 118)
			AX-212342341	rs135258919	1,808,145	0.8499	0.1693	Missense	HSF1
			AX-419792758	rs207655744	1,806,340	−0.8430	0.1675	3 prime UTR	HSF1
			AX-117081655	rs109234250	1,802,265	−0.7752	0.1565	Missense	DGAT1
			AX-124353826	rs109326954	1,802,266	−0.6848	0.1395	Missense	DGAT1
			AX-311625843	rs211223469	1,799,476	0.6695	0.1367	Intron	DGAT1
			AX-311625845	rs209876151	1,800,439	0.6313	0.1319	Intron	DGAT1
			AX-311625833	rs384957047	1,793,616	0.5941	0.1243	Upstream gene	DGAT1 (dist = 1735)
			AX-371638654	rs211016627	1,807,655	−0.4948	0.1052	Intron	HSF1
	5 (104)	1.66	AX-419663582	rs43454033	104,831,727	−0.1767	0.0560	Intron	ANO2
	8 (0)	0.74	AX-419764649	rs721532493	887,406	−0.0319	0.0143	Intron	PALLD
	23 (24)	0.62	AX-419669189	rs435871639	24,210,330	−0.0168	0.0086	Intron	PKHD1
	3 (79)	0.60	AX-106724308	rs42314807	79,480,234	−1.8050	0.4151	Intron	PDE4B
	3 (79)	0.60	AX-169413290	rs41596885	79,508,402	0.7012	0.1766	Intron	PDE4B
PY	23 (24)	0.73	AX-419655926	rs380223715	24,021,950	−0.0118	0.0086	Intron	PKHD1
	8 (69)	0.70	AX-419606850	rs211419403	69,542,993	−0.0259	0.0144	Intron	GFRA2
	8 (0)	0.67	AX-419764649	rs721532493	887,406	−0.0214	0.0137	Intron	PALLD
	1 (69)	0.53	AX-419771850	rs799074643	69,736,662	0.0607	0.0294	Intron	UMPS
SCS	8 (0)	1.60	AX-419631051	rs109008410	668,048	0.0012	0.0253	Intron	PALLD
	23 (23)	1.20	AX-312701115	rs467721520	23,807,184	−0.0006	0.0150	Intron	PKHD1
	23 (24)	1.10	AX-106721976	rs109825181	24,117,682	−0.0012	0.0246	Intron	PKHD1
	5 (104)	0.54	AX-124344695	rs110571898	104,682,238	0.0005	0.0127	Missense	VWF

^a MY: Adjusted-305 days milk yield (kg); FY: Adjusted-305 days fat yield (kg); PY: Adjusted-305 days protein yield (kg); SCS: log₂ transferred somatic cell score; ^b Bos taurus autosome; ^c Genetic variance; ^d The positions were based on UMD3.1.