Table 1. Evolved beneficial alleles.
| PRIMARY MUTATIONS | |||
|---|---|---|---|
| Allele | Position | Mutation | Annotation |
|
Mext_4158 Protein of unknown function DUF336 (EfgA) | |||
| efgAevo1 | 4627319 | C→T | T60I |
| efgAevo2 | 4627352 | G→A | G49D |
| efgAevo3 | 4627304 | G→A | G65D |
| efgAevo4 | 4627151 | Δ11 bp | frameshift |
| efgAevo5 | 4627109 | Δ63 | deletion |
| efgAevo6 | 4627487 | C→T | T4I |
| efgAevo7 | 4627177 | G→A | M107I |
| efgAevo8 | 4627428 | A→C | T24P |
| efgAevo9 | 4627492 | C→G | H2Q |
| efgAevo10 | 4627157 | G→A | S114N |
| efgAevo11 | 4627226 | T→A | L91H |
| efgAevo12 | 4627275 | T→C | S75P |
| efgAevo13 | 4627170 | G→C | A110P |
| efgAevo14 | 4627223 | Δ1 bp | frameshift |
| efgAevo15 | 4627223 | Δ1 bp | frameshift |
| efgAevo16 | 4627173 | G→T | G109C |
| efgAevo17 | 4627305 | G→A | G65S |
|
Mext_1636 Peptide deformylase (PDF) | |||
| defevo1 | 1824018 | G→A | G143S |
| defevo2 | 1824284 | T→G | V54G |
|
Mext_0925 MarR family regulator | |||
| Mext_0925evo1 | 1001161 | C→G | H119D |
| Mext_0925evo2 | 1001376 | Δ1 bp | frameshift |
|
Mext_4194 ABC transporter-like protein | |||
| potGevo1 | 4664528 | G→A | R115Q |
|
Mext_4478/Mext_4479 Hypothetical protein/ribosomal L11 methyltransferase | |||
| prmAevo1 | 4996712 | G→C | −541/−77 |
| SECONDARY MUTATIONS | |||
|
Mext_0399 Heat-inducible transcription repressor HrcA | |||
| hrcAevo1 | 443917 | Δ1bp | frameshift |
|
Mext_0606 Adenylate cyclase | |||
| efgBevo1 | 666124 | C→T | R332C |
| efgBevo2 | 666131 | G→A | E313K |
|
Mext_1058 Molybdenum cofactor cytidylyltransferase | |||
| Mext_1058evo1 | 1156254 | G→C | G91R |
|
Mext_2112 XRE family transcriptional regulator/shikimate kinase | |||
| Mext_2112evo1 | 2369958 | T→C | L105P |
|
Mext_2690 P-type Cu+ transporter | |||
| Mext_2690evo1 | 3008713 | G→C | G610R |
|
Mext_3596 Serine protease Do/acid stress chaperone HdeA | |||
| mntRevo1 | 3975117 | A→G | T108A |
|
Mext_3827/Mext_3828 Serine protease Do/acid stress chaperone HdeA | |||
| Mext_3828evo1 | 4252124 | T→C | +371/−293 |
|
Mext_4337/Mext_4338 Cytochrome o ubiquinol oxidase/transmembrane transporter protein | |||
| cyoAevo1 | 4822969 | Δ37 bp | −54/+105 |
|
Mext_4456 Beta-lactamase domain protein | |||
| Mext_4456evo1 | 4963821 | T→C | Y265H |