Table 2.
Calculated Free Energy Profile for the Catalytic Reaction of Cas9 Different Systemsa
| ref | LYS848 far | LYS848 near/ionized | LYS848 near/un-ionized | ||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ΔGpt | Δg‡,NA | Δg‡ | ΔGpt | Δg‡,NA | Δg‡ | ΔGpt | Δg‡,NA | Δg‡ | ΔGpt | Δg‡,NA | Δg‡ | ||
| 10.93 | 33 | 43.93 | 43.93 | 27.49 | 20.73 | 48.22 | 3.64 | 17.37 | 21.01 | 4.38 | 21.97 | 26.35 | 17.80 |
Calculated free energies (kcal/mol) of proton transfer (PT) step, nucleophilic attack (NA) step, and total barrier in the reference solution and the three cases for Cas9. The observed barrier was converted from the kcat of ref 26.