Table 1. MS-Identified 2D Gel Protein Spots.
| a | b | pI |
approx.
MW (KDa) |
||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| Sr., No. | protein name/ID | accession number | spot number | fold changeb | p-value | FDR | observed | database | observed | database | mascot score | sequence coverage (%) | mass values searched | mass values matched | PMF score |
| 1 | vimentin/VIM | P08670 | C12/T12 | 1.51 | 0.005 | 0.04 | 5.12–5.63 | 5.06 | 51–54 | 53.61 | 73 | 24 | 62 | 11 | 100.6 |
| 2 | tubulin beta 2Cchain/TBB2C | P68371 | C13/T13 | 2.50 | 0.001 | 0.03 | 4.63–4.94 | 4.79 | 50 | 50.25 | 58 | 40 | 127 | 19 | 145 |
| 3 | tubulin betachain/TBB5 | P07437 | C14/T14 | –1.13 | 0.42 | 0.44 | 4.47–4.83 | 4.78 | 45–49 | 49.63 | 90 | 33 | 68 | 11 | 122 |
| 4 | tubulin alpha 1Cchain/TBA1C | Q9BQE3 | C15/T15 | 1.54 | 0.015 | 0.05 | 4.87–5.21 | 4.96 | 33–36 | 49.86 | 76 | 31 | 55 | 9 | 121 |
| 5 | actin, cytoplasmic 1/ACTB | P60709 | C16/T16 | 1.57 | 0.032 | 0.06 | 5.1–5.4 | 5.29 | 41–45 | 41.71 | 157 | 46 | 113 | 12 | 89.9 |
| 6 | actin, cytoplasmic 2/ACTG | P63261 | C17/T17 | 1.50 | 0.014 | 0.05 | 5.0–5.5 | 5.31 | 43 | 42.10 | 76 | 58 | 154 | 17 | 85.4 |
| 7 | galectin-1/LGALS1 | P09382 | C18/T18 | 1.43 | 0.034 | 0.06 | 5.1–5.3 | 5.34 | 8–12 | 15.04 | 63 | 51 | 74 | 6 | 35.8 |
| 8 | endoplasmin/ENPL | P14625 | C19/T19 | 1.55 | 0.069 | 0.10 | 4.6–4.9 | 4.76 | 76–80 | 92.41 | 64 | 33 | 176 | 27 | 135.8 |
| 9 | retinol-binding protein 1/RBP1 | P09455 | C20/T20 | 2.02 | 0.041 | 0.07 | 4.9 | 4.99 | 14–16 | 16.01 | 62 | 51 | 38 | 8 | 109 |
| 10 | albumin, partial/AEE | F6KPG5 | C21/T21 | –1.72 | 0.024 | 0.06 | 6.7–7.1 | 5.73 | 66–71 | 66.48 | 72 | 33 | 64 | 16 | 100.3 |
| 11 | alloalbumin venezia/AAA | P02768 | C22/T22 | 1.52 | 0.012 | 0.05 | 6.6–6.9 | 5.99 | 71 | 71.17 | 124 | 32 | 74 | 20 | 89.7 |
| 12 | serum albumin/ALBU | P02768 | C23/T23 | –1.55 | 0.033 | 0.06 | 6.4–6.8 | 5.92 | 71 | 71.31 | 68 | 22 | 75 | 15 | 65.6 |
| 13 | apolipoprotein A-I/APOA1 | P02647 | C24/T24 | –1.74 | 0.014 | 0.05 | 4.3–5.2 | 5.56 | 27–32 | 30.75 | 77 | 47% | 132 | 13 | 94.2 |
| 14 | collagen alpha 2(VI) chain/COL6A2 | P12110 | C25/T25 | 1.56 | 0.013 | 0.05 | 5.6–5.9 | 5.85 | 120 | 108 | 180 | 13 | 41 | 13 | 149 |
| 15 | ATP synthase subunit beta, mitochondrial/ATPB | P06576 | C26/T26 | 2.23 | 0.034 | 0.06 | 4.8–5.1 | 5.26 | 45–50 | 56.52 | 100 | 58 | 160 | 25 | 178 |
| 16 | prohibitin/PHB | P35232 | C27/T27 | 1.26 | 0.287 | 0.33 | 6.2–6.4 | 5.57 | 17–20 | 29.78 | 62 | 33 | 27 | 6 | 72 |
| 17 | phosphatidylethanolamine-binding protein 1/ PEBP1 | P30086 | C28/T28 | –1.29 | 0.239 | 0.28 | 7.1 | 7.01 | 17 | 21.15 | 61 | 40 | 109 | 8 | 55 |
| 18 | keratin 1/K1 | H6VRF9 | C29/T29 | 1.42 | 0.12 | 0.16 | 7.2–7.8 | 7.60 | 53 | 66.02 | 74 | 25 | 50 | 9 | 84.5 |
| 19 | keratin, type II cytoskeletal 2 epidermal/K22E | P35908 | C30/T30 | –1.31 | 0.14 | 0.19 | 8.8 | 8.07 | 52–54 | 65.39 | 58 | 22 | 53 | 9 | 81 |
| 20 | keratin, type I cytoskeletal 9/K1C9 | P35527 | C31/T31 | 1.85 | 0.14 | 0.18 | 5.6 | 5.14 | 57–62 | 62.02 | 69 | 25 | 100 | 13 | 98 |
Six proteins with fold change ≥1.5, FDR ≤ 0.05, and PMF score >79 are shown in bold.
“–” sign denotes downregulated expression in OC.