Table 4.
The gene start prediction errors in genomes of each group: (A) with canonical RBS, (B) with non-canonical RBS and (C) with frequent leaderless transcription
| GeneMarkS-2 groups | A | B | C | |
|---|---|---|---|---|
| Number of genes in each class | 1 087 637 | 284 694 | 244 773 | |
| Missed genes | by MetaProdigal | 14 332 | 3795 | 3561 |
| by GeneMark-HM | 8797 | 2760 | 2353 | |
| Difference as % of all genes in the test set | 0.51 | 0.36 | 0.49 | |
| Wrong starts | by MetaProdigal | 115 201 | 35 127 | 40 263 |
| by GeneMark-HM | 106 993 | 31 370 | 36 374 | |
| Difference as % of all genes in the test set | 0.75 | 1.32 | 1.59 | |