Table 6.
Genes predicted in the four human metagenomes with indication of numbers of genes predicted by the three alternative branches of GeneMark-HM (Figure 1). Contigs shorter than 1500 nt were not included in this analysis
| Assembly ID | Site | Size, Mb | # of contigs | # of genes predicted | Pan-genome path | MetaGeneMark path | Gene MarkS-2 path | % by pan-genome path |
|---|---|---|---|---|---|---|---|---|
| GCA_013297495 | skin | 44.5 | 7569 | 49 285 | 39 154 | 10 131 | 375 | 79.4 |
| GCA_900415335 | gut | 49.7 | 5364 | 44 476 | 44 211 | 265 | 0 | 99.4 |
| GCA_003604395 | gut | 85.9 | 12 353 | 88 015 | 87 305 | 710 | 0 | 99.2 |
| GCA_003640265 | oral | 296.0 | 81 048 | 318 534 | 283 412 | 35 122 | 170 | 89.0 |