Table 1.
P. donghuensis P482 “cluster 17” annotation and features.
| Locus (GenBank location) |
Gene length (bp) | Product size (aa) | Annotation(s)a | KEGG [KO, EC]b | KEGG pathwayc | Number of (GenBank) high score hitsd |
|---|---|---|---|---|---|---|
|
BV82_4236 (JHTS01000048.1: 16103–117158) |
1056 | 351 |
NAD-dependent epimerase/dehydratase family protein (RfbD domain containing) |
– | – | 8 |
|
BV82_4237 (JHTS01000048.1: 117159–118430) |
1272 | 423 |
patA putrescine aminotransferase |
KO: K09251 (EC: 2.6.1.82) |
ko00310 ko00330 ko01100 ko01120 | > 100 |
|
BV82_4238 (JHTS01000048.1: 118427–118870) |
444 | 148 |
Polyketide cyclase/dehydrase and lipid transport family protein (SRPBCC ligand-binding domain containing) |
– | – | 3 |
|
BV82_4239 (JHTS01000048.1: 118876–120021) |
1146 | 382 |
Putative isobutylamine N-hydroxylase (CaiA domain containing [acyl-CoA dehydrogenase]) |
– | – | 4 |
|
BV82_4240 (JHTS01000048.1: 120018–120845) |
828 | 276 | SDR family NAD(P)-dependent oxidoreductase | – | – | 44 |
|
BV82_4241 (JHTS01000048.1: 120856–121848) |
993 | 309 | Fatty acid desaturase family protein | – | – | 2 |
|
BV82_4242 (JHTS01000048.1: 121881–122684) |
804 | 272 |
Hypothetical protein DUF3050 domain containing |
– | – | 4 |
|
BV82_4243 (JHTS01000048.1: 122765–123829) |
1065 | 355 |
emrA efflux transporter RND family, MFP subunit (HlyD_D23 domain containing) |
K03543 | – | 10 |
|
BV82_4244 (JHTS01000048.1: 123826–125400) |
1575 | 525 |
emrB H + antiporter-2 family protein |
K03446 | – | 61 |
|
BV82_4245 (JHTS01000048.1: 125364–126713) |
1350 | 450 |
tolC Outer membrane TolC family protein |
K12340 | ko01501 ko01503 ko02020 ko03070 ko04626 | 6 |
aCombined data obtained using: IGS annotations, KEGG BlastKoala, NCBI CDD and InterPro annotations.
bKO: Kegg Orthologs, EC: enzyme classification; obtained using KEGG BlastKOALA tool.
cPathways: ko00310—lysine degradation, ko00330—arginine and proline metabolism, ko01100—metabolic pathways, ko01120—microbial metabolism in diverse environments, ko01501—beta-lactam resistance, ko01503—cationic antimicrobial peptide (CAMP) resistance, ko02020—two-component system, ko03070—bacterial secretion system, ko04626—plant-pathogen interactions.
d ≥ 90% query coverage; 75% identity to proteins of taxon Pseudomonas spp.