Table 1.
Composition of the datasets used for the different analysis, with names, codes and number of samples processed and filtered for each population and grouped by the type of analysis.
| Breeds ID | Breeds name | Raw dataset (n animals) | Haplotype sharing (n animals) | Population structure (n animals) | Landscape Genomics (n animals) |
|---|---|---|---|---|---|
| ALP | Camosciata delle Alpi | 143 | 117 | 30 | 43 |
| ARG | Argentata dell'Etna | 48 | 46 | 30 | 41 |
| ASP | Capra dell'Aspromonte | 24 | 24 | 24 | 18 |
| BEZ | Bezoar (outgroup) | 7 | 7 | 7 | 0 |
| BIA | Bianca Monticellana | 24 | 23 | 23 | 17 |
| BIO | Bionda dell'Adamello | 24 | 24 | 24 | 22 |
| CAP | Capestrina | 24 | 22 | 22 | 15 |
| DDS | Derivata di Siria | 32 | 25 | 25 | 11 |
| FAC | Facciuta della Valnerina | 24 | 24 | 24 | 12 |
| FUL | Fulva del Lazio | 22 | 20 | 20 | 14 |
| GAR | Garganica | 40 | 37 | 30 | 3 |
| GCI | Grigia Ciociara | 43 | 39 | 30 | 18 |
| GIR | Girgentana | 59 | 56 | 30 | 9 |
| GRF | Garfagnana | 28 | 25 | 25 | 18 |
| JON | Jonica | 16 | 15 | 15 | 3 |
| LIV | Capra di Livo | 24 | 22 | 22 | 19 |
| MAL | Maltese | 16 | 16 | 16 | 10 |
| MES | Messinese | 24 | 23 | 23 | 21 |
| MNT_M | Montecristo (mainland) | 18 | 12 | 12 | 1 |
| MNT_I | Montecristo (island) | 24 | 23 | 23 | 1 |
| MON | Capra di Montefalcone | 24 | 23 | 23 | 13 |
| MXS | Incrocio Maltese e Sarda | 36 | 36 | 30 | 0 |
| NIC | Nicastrese | 24 | 24 | 24 | 14 |
| NVE | Nera di Verzasca | 19 | 19 | 19 | 11 |
| ORO | Orobica | 23 | 23 | 23 | 5 |
| RCC | Roccaverano | 28 | 28 | 28 | 25 |
| RME | Rossa Mediterranea | 46 | 40 | 30 | 13 |
| SAA | Saanen | 44 | 44 | 30 | 20 |
| SAM | Maltese sampled in Sardinia | 15 | 15 | 15 | 5 |
| SAR | Sarda | 33 | 33 | 30 | 32 |
| TER | Capra di Teramo | 43 | 30 | 30 | 8 |
| VAL | Valdostana | 24 | 24 | 24 | 16 |
| VLS | Vallesana | 24 | 17 | 17 | 7 |
| VPS | Capra della Val Passiria | 24 | 24 | 24 | 24 |
| TOTAL Animals | 1071 | 980 | 802 | 489 | |