Table 3.

Difference in microbiome composition between functional outcome groups (Genus level).

Taxon	Occupancy			Fold change
	Good outcome	Poor outcome	p-value	good vs poor outcome
Enterobacteriaceae(f)	0.0732 ± 0.0077	0.0611 ± 0.0159	0.4911	0.8↓
Bacteroides	0.0608 ± 0.0058	0.0652 ± 0.0105	0.7302	1.1↑
Ruminococcaceae(f)	0.0493 ± 0.0036	0.0740 ± 0.0090	0.0045	1.5↑
Pseudomonas	0.0559 ± 0.0055	0.0635 ± 0.0101	0.5312	1.1↑
Flavobacterium	0.0637 ± 0.0062	0.0441 ± 0.0119	0.1609	0.7↓
Prevotella	0.0336 ± 0.0038	0.0515 ± 0.0093	0.0467	1.5↑
Micrococcus	0.0399 ± 0.0037	0.0349 ± 0.0065	0.5426	0.9↓
Staphylococcus	0.0291 ± 0.0039	0.0315 ± 0.0096	0.7945	1.1↑
Enhydrobacter	0.0260 ± 0.0028	0.0187 ± 0.0045	0.2385	0.7↓
Corynebacterium	0.0228 ± 0.0028	0.0197 ± 0.0051	0.6124	0.9↓
Clostridiales(o)	0.0191 ± 0.0020	0.0206 ± 0.0040	0.7371	1.1↑
Streptococcus	0.0168 ± 0.0028	0.0214 ± 0.0040	0.3634	1.3↑
Acinetobacter	0.0194 ± 0.0037	0.0177 ± 0.0046	0.7777	0.9↓
Bifidobacterium	0.0189 ± 0.0019	0.0161 ± 0.0032	0.5125	0.9↓
Lachnospiraceae(f)	0.0141 ± 0.0011	0.0147 ± 0.0029	0.8446	1.0↑
Sphingomonas	0.0138 ± 0.0024	0.0130 ± 0.0057	0.8919	0.9↓
Comamonadaceae(f)	0.0104 ± 0.0018	0.0152 ± 0.0050	0.3747	1.5↑
Collinsella	0.0082 ± 0.0010	0.0172 ± 0.0060	0.1511	2.1↑
Akkermansia	0.0111 ± 0.0019	0.0096 ± 0.0029	0.7190	0.9↓
Faecalibacterium	0.0100 ± 0.0012	0.0080 ± 0.0016	0.3360	0.8↓
Ruminococcus	0.0070 ± 0.0011	0.0070 ± 0.0021	0.9963	1.0↑
ZB2(c)	0.0069 ± 0.0008	0.0070 ± 0.0022	0.9438	1.0↑
Clostridiaceae(f)	0.0052 ± 0.0006	0.0086 ± 0.0023	0.1648	1.7↑
Finegoldia	0.0090 ± 0.0022	0.0043 ± 0.0014	0.0799	0.5↓
Parabacteroides	0.0074 ± 0.0010	0.0056 ± 0.0020	0.4270	0.8↓
Anaerococcus	0.0087 ± 0.0021	0.0030 ± 0.0011	0.0184	0.4↓
Rikenellaceae(f)	0.0052 ± 0.0008	0.0065 ± 0.0018	0.4563	1.3↑
Caulobacteraceae(f)	0.0029 ± 0.0008	0.0085 ± 0.0054	0.3134	3.0↑
Neisseriaceae(f)	0.0072 ± 0.0011	0.0041 ± 0.0014	0.0864	0.6↓
Enterococcus	0.0079 ± 0.0035	0.0035 ± 0.0010	0.2234	0.4↓
Bacillu	0.0038 ± 0.0013	0.0075 ± 0.0043	0.4232	2.0↑
TM7-1(c)	0.0050 ± 0.0010	0.0059 ± 0.0026	0.7594	1.2↑
Blautia	0.0070 ± 0.0010	0.0039 ± 0.0010	0.0399	0.6↓
S24-7(f)	0.0028 ± 0.0006	0.0080 ± 0.0031	0.1172	2.8↑
[Ruminococcus]	0.0043 ± 0.0006	0.0056 ± 0.0021	0.5542	1.3↑
Enterococcaceae(f)	0.0047 ± 0.0009	0.0050 ± 0.0016	0.8881	1.1↑
Dialister	0.0069 ± 0.0011	0.0026 ± 0.0008	0.0023	0.4↓
Clostridiales(o)	0.0034 ± 0.0006	0.0059 ± 0.0028	0.3843	1.8↑
Aerococcaceae(f)	0.0064 ± 0.0019	0.0021 ± 0.0009	0.0412	0.3↓
Streptophyta(o)	0.0023 ± 0.0006	0.0061 ± 0.0037	0.3253	2.6↑
Propionibacterium	0.0052 ± 0.0008	0.0032 ± 0.0006	0.0415	0.6↓
Microbacteriaceae(f)	0.0052 ± 0.0007	0.0027 ± 0.0008	0.0210	0.5↓
Leuconostoc	0.0014 ± 0.0009	0.0065 ± 0.0064	0.4393	4.7↑
Actinomycetales(o)	0.0023 ± 0.0004	0.0051 ± 0.0028	0.3270	2.2↑
Bifidobacteriaceae(f)	0.0020 ± 0.0010	0.0051 ± 0.0021	0.1909	2.5↑
Rothia	0.0051 ± 0.0012	0.0017 ± 0.0009	0.0267	0.3↓