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. 2021 May 27;28(28):36967–36983. doi: 10.1007/s11356-021-14593-z

Table 2.

Different classification of microbiome: the microbiome can be classified according to their type, distribution, and their effect on the animal/human health.

Classification of microbiota according to:
Type Distribution Role
1. Bacteria • External microbiota (on the outer skin)

a.1. Beneficial microbiota

(e.g., SCFA and vitamin producing bacteria/probiotics)

2. Archaea

• Internal microbiota

➢ Gut microbiota

➢ Oral microbiota

➢ Naris microbiota

➢ Vaginal microbiota

➢ Milk microbiota

3. Fungi

2. Pathogenic microbiota

(e.g., cancer and metabolic syndrome inducing bacteria)

4. Protozoa

5. Viruses (virome)

➢ Plant-derived viruses

➢ Giant viruses

➢ Bacteriophages