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. 2021 May 13;12:664665. doi: 10.3389/fmicb.2021.664665

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Copyright © 2021 Karlsson, Tano, Jernberg, Hickman, Guy, Järhult and Wang.

This is an open-access article distributed under the terms of the Creative Commons Attribution License (CC BY). The use, distribution or reproduction in other forums is permitted, provided the original author(s) and the copyright owner(s) are credited and that the original publication in this journal is cited, in accordance with accepted academic practice. No use, distribution or reproduction is permitted which does not comply with these terms.

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Phylogeny of the 29 Y. enterocolitica 4/O:3. The maximum-likelihood tree is based on all polymorphic positions identified by cgMLST in 30 genomes, including and rooted in an isolate from biovar 2 used as an outgroup, and not shown in the tree. Numbers over branches are the percentage of ultrafast bootstraps supporting that branch; support values <80 are not represented. The scale represents the average number of substitutions per site. Metadata for collection year, country, host, AMR profile, McNally ST, and cgMLST V1 + HierCC V1 were presented using CLC Genomics Workbench.