Table 7.
Coefficient Values for the Multiple Linear Regression Analyses for the DNA TE Superfamilies: TE Density Is the Response Variable and GC Content, Recombination Rate, Gene Length (GL), , Duplication Status (Data Set 1), and Essentiality Are Predictors
| MULE-MuDR |
TcMar-Mariner |
TcMar-Tigger |
hAT |
hAT-Blackjack |
hAT-Charlie |
hAT-Tip100 |
||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| Variable | 2-kb | 10-kb | 2-kb | 10-kb | 2-kb | 10-kb | 2-kb | 10-kb | 2-kb | 10-kb | 2-kb | 10-kb | 2-kb | 10-kb |
| Log(GC) | −1.528 ∗ | −7.441 ∗ | 2.927 ∗ | −3.255 ∗ | 8.355 ∗ | 3.835 ∗ | 0.212 ∗ | −2.532 ∗ | −0.907 | −5.873 ∗ | 3.409 ∗ | −0.301 | 0.213 ∗ | −4.833 ∗ |
| Recomb | −1.505 | −1.980 | / | 0.445 ∗ | −0.205 | 0.413 | / | / | 1.454 | 0.363 ∗ | 1.926 ∗ | 1.623 ∗ | / | 0.191 |
| Log() | 2.933 | 2.360 | / | / | 0.298 ∗ | / | / | −1.210 ∗ | −0.382 | −0.437 | −0.212 | −0.702 ∗ | −0.018 | −1.131 ∗ |
| Log(GL) | −1.065 ∗ | −2.633 ∗ | 0.088 | −1.652 ∗ | 2.439 ∗ | 1.159 ∗ | −0.870 ∗ | −1.631 ∗ | −1.379 ∗ | −2.758 ∗ | 0.400 | −0.606 ∗ | −0.907 | −2.451 ∗ |
| Status | −0.240 | −0.239 | 0.530 | / | 0.874 | 1.161 ∗ | 0.400 | 0.456 | / | −0.656 ∗ | 0.891 | 0.575 | / | −0.224 |
| Ess | 2.906 | 1.768 | / | / | 0.110 ∗ | 0.105 ∗ | / | 1.006 | / | −0.0572 | 0.572 | 1.221 | −0.970 | / |
| Log(GC)×Recomb | 0.422 | 0.556 | / | / | / | −0.101 | / | / | −0.244 | / | −0.437 ∗ | −0.353 ∗ | / | / |
| Log(GC)×Log() | −0.490 | −0.453 | / | / | / | / | / | 0.189 | 0.110 | 0.112 | 0.143 | 0.191 ∗ | / | 0.205 ∗ |
| Log(GC)×Log(GL) | / | 0.490 ∗ | −0.261 ∗ | 0.269 ∗ | −0.812 ∗ | −0.398 ∗ | / | 0.274 ∗ | 0.137 | 0.549 ∗ | −0.223 ∗ | 0.105 ∗ | / | 0.490 ∗ |
| Log(GC)×Status | / | / | / | / | −0.219 | −0.294 ∗ | / | / | / | / | −0.170 | −0.152 | / | / |
| Recomb×Log(GL) | / | / | / | −0.038 ∗ | 0.022 | / | / | / | −0.051 ∗ | −0.035 ∗ | −0.030 ∗ | −0.030 ∗ | / | −0.022 |
| Log()×Log(GL) | −0.084 | −0.047 | / | / | −0.026 ∗ | / | / | 0.042 ∗ | / | / | −0.027 ∗ | / | / | 0.033 ∗ |
| Log(GL)×Status | / | / | −0.047 | / | / | / | −0.033 | −0.030 | / | 0.056 ∗ | −0.023 | / | / | 0.022 |
| Log()×Ess | / | / | / | / | / | / | / | / | / | / | 0.056 ∗ | 0.033 | / | / |
| Log(GL)×Ess | −0.274 ∗ | −0.147 | / | / | / | / | / | / | / | / | −0.040 | −0.036 | / | / |
| Adjusted R2 | 0.903 | 0.878 | 0.906 | 0.879 | 0.484 | 0.342 | 0.927 | 0.890 | 0.951 | 0.923 | 0.443 | 0.249 | 0.930 | 0.894 |
Note.—/, variable not retained in the step Akaike Information Criterion (AIC) process; Status, categorical variable for duplication status with duplicated as reference category and singleton as second category; Ess, categorical variable for essentiality status with nonessential as reference category and essential as second category; Bold with asterisk, significant values considering Bonferroni correction for multiple tests.