Table 1. Evaluated Applicability of MS Annika to Data Sets Measured Using Various Cross-Linksa.
Results for these evaluations can be found in Supporting Information Table S1. The application to CDI linkers is only available in MS Annika for Proteome Discoverer 2.5. In addition to the mentioned linkers, MS Annika can deal with any sulfoxy-based, urea or PIR linker.