Table 1.

ViPTree Gene ORF Prediction and Blastx Analysis of the 12 Selected Phage Sequences.

Transcripts IDs and Predicted ORFs	Length (bp)	Range	RPK	Hit Description [Organism]	% Identities	E-Value	% Query Coverage
MW965290	5544		111.7
ORF1	398	1–398		WP_195316289.1 phage tail tape measure protein [Serratia marcescens]	70	2 × 10−51	97
ORF2 #	357	398–754		WP_039351538.1 phage tail protein [Pectobacterium fontis]	90	1 × 10−75	97
ORF3 #	753	804–1556		MBG6243408.1 phage minor tail protein L [Candidatus Symbiopectobacterium sp. Dall1.0]	96	0.0	100
ORF4 #	576	1713–2288		MBG6243407.1 peptidase P60 [Candidatus Symbiopectobacterium sp. Dall1.0]	95	8 × 10−165	94
ORF5 #	606	2272–2877		WP_104212022.1 tail assembly protein [Pectobacterium brasiliense]	81	2 × 10−85	100
ORF6	2611	2934–5544		WP_104212026.1 phage tail protein [Pectobacterium brasiliense]	91	2 × 10−70	100
MW965281	2188		112
ORF1	318	255–572		WP_021179416 fimbrial protein TcfA [Serratia fonticola]	62	4 × 10−29	90
ORF2 #	252	557–808		WP_146751463.1 ANR family transcriptional regulator [Enterobacter cloacae complex]	56	5 × 10−7	60
ORF3 #	1089	859–1947		WP_187497555.1 phage tail protein [Pantoea Psp39-30]	43	2 × 10−82	98
MW965289	1777		128.3
ORF1	99	1–99		EFC4054519.1 HK97 family phage prohead protease [Escherichia coli]	81	2 × 10−9	100
ORF2 #	1227	109–1335		MBG6243159.1 phage major capsid protein [Candidatus Symbiopectobacterium sp. Dall1.0]	85	0.0	99
ORF3 #	300	1426–1725		WP_044208854.1Phage gp6-like head-tail connector family protein [Pectobacterium odoriferum]	87	3 × 10−57	100
MW965291	6115		213.4
ORF1	580	1–580		WP_108703399 Terminase small subunit [Enterobacter hormaechei]	96	2 × 10−86	96
ORF2 #	1659	583–2241		WP_108703400 terminase large subunit [Citrobacter europaeus]	98	0.0	100
ORF3 #	1935	2324–4258		WP_135684645.1 phage major capsid protein [Klebsiella pneumoniae]	95	0.0	99
ORF4 #	168	4297–4464		WP_181941880.1 hypothetical protein [Klebsiella pneumoniae]	89	8 × 10−28	100
ORF5 #	1359	4464–5822		NIC64170.1 phage portal protein [Klebsiella pneumoniae]	94	0.0	100
ORF6	297	5819–6115		RTO54147.1 phage gp6-like head-tail connector protein, partial [Enterobacter hormaechei]	80	8 × 10−47	100
MW965287	1419		71.2
ORF1	482	1–482		MBD2797976.1 HK97 family phage prohead protease [Xenorhabdus sp. 18]	72	6 × 10−74	96
ORF2	953	467–1419		QBY47020.1 phage portal protein [Arsenophonus nasoniae]	92	0.0	100
MW965282	770		61.0	WP_187497555.1 putative phage tail protein [Plautia stali symbiont]	99	1 × 10−158	84
MW965283	3268		114.1	WP_113869621.1 phage tail tape measure protein [Brenneria salicis]	82	0.0	82
MW965286 *	251		47.8	SPW64604.1 putative head-tail adaptor [Escherichia coli]	98	1 × 10−20	73
MW965288	768		50.8	MBJ9599707.1 phage portal protein [Citrobacter werkmanii]	99	4 × 10−179	94
MW965292 #	1852		123.1	WP_164114194.1 phage major capsid protein [Serratia marcescens]	63	0.0	77
MW965285	299		23.4	WP_010281992.1 portal protein [Pectobacterium brasiliense]	95	8 × 10−55	92
MW965284 *	345		46.4	SUH06759.1 portal protein [Salmonella enterica subsp. enterica]	87	1 × 10−27	66

RPK: read counts divided by the length of each transcript in kilobases. * putative pseudogene (presence of frameshifts). # Complete CDS. Grey shaded cells represent different transcript IDs.