| AD | Alzheimer’s disease |
| AMBRA1 | Autophagy and beclin 1 regulator 1 |
| APP | Amyloid precursor protein |
| ARIH1 | Ariadne RBR E3 ubiquitin ligase homolog 1 |
| ATG | Autophagy-related protein |
| ATM | Ataxia-telangiectasia mutated |
| Aβ | Amyloid-β peptide |
| BCL2L13 | BCL2 like 13 |
| BNIP3 | BCL2 interacting protein 3 |
| CI | Complex I |
| CIII | Complex III |
| CK2 | Casein kinase II |
| CL | Cardiolipin |
| CR | Caloric restriction |
| CS | Cockayne syndrome |
| CSB | CS complementation group B |
| CuZnSOD (SOD1) | Copper-zinc SOD |
| DNM1L | Dynamin-1-like protein |
| Drp1 | Dynamin-1-like protein |
| FKBP8 | FKBP prolyl isomerase 8 |
| FUNDC1 | FUN14 domain containing 1 |
| Gp78 | Glycoprotein 78 |
| GPx1 | Glutathione peroxidase 1 |
| Grx2 | Glutaredoxin 2 |
| GSNOR | S-nitrosoglutathione reductase |
| HAT | Histone acetyltransferase |
| HDAC | Histone deacetylases |
| HIF1a | Hypoxia-inducible factor 1-alpha |
| HUWE1 | HECT, UBA and WWE domain-containing protein 1 |
| IMM | Mitochondrial inner membrane |
| iPSC | induced pluripotent stem cell |
| IR | Ischemia/reperfusion |
| Keap1 | Kelch-like ECH-associated protein 1 |
| LBD | Lewy Body Dementia |
| LIR | LC3 interacting region |
| mAPP | Mutant APP |
| MnSOD (SOD2) | Manganese superoxide dismutase |
| MPP | Matrix processing peptidase |
| MsrB2 | Methionine sulfoxide reductase B2 |
| mtKR | Mt KillerRed |
| MMP | Mitochondrial membrane potential |
| MTS | Mitochondrial targeting sequence |
| MUL1 | Mitochondrial E3 ubiquitin protein ligase 1 |
| NAD | Nicotinamide adenine dinucleotide |
| NBR1 | Neighbor of BRCA1 gene 1 |
| NDP52 | Nuclear domain 10 protein 52 |
| NIX (BNIP3-like, NIX/BNIP3L) | NIP3-like protein X |
| NK | Natural killer |
| NR | Nicotinamide riboflavide |
| Nrf2 | Nuclear factor (erythroid-derived 2)-like 2 transcription factor |
| OMM | Mitochondrial outer membrane |
| OPA1 | Dynamin-like 120 kDa protein |
| OPTN | Optineurin |
| p62/SQSTM1 | Sequestosome-1 |
| PARL | Presenilin-associated rhomboid like |
| PD | Parkinson’s disease |
| PGAM5 | Phosphoglycerate mutase 5 |
| PHD | Prolyl hydroxylase |
| PINK1 | Phosphatase and tensin homologue (PTEN)-induced putative kinase 1 |
| PMA | Phorbol 12-myristate 13-acetate |
| PRDX6 | Peroxiredoxin-6 |
| Prx3 | Peroxiredoxin-3 |
| Prx5 | Peroxiredoxin-5 |
| Rbx1 | E3 ubiquitin-protein ligase RBX1 |
| ROS | Reactive oxygen species |
| SENPs | Sentrin/SUMO specific proteases |
| SIAH1 | E3 ubiquitin-protein ligase SIAH1 |
| SIRT1 | Nicotinamide adenine dinucleotide–dependent deacetylase sirtuin 1 |
| SMURF1 | SMAD ubiquitination regulatory factor 1 |
| SNc | Substantia nigra pars compacta |
| SNCA | Alpha-Synuclein |
| TAX1BP1 | TAX1 binding protein 1 |
| TIM | Translocase of the inner membrane |
| TOM | Translocase of the outer membrane |
| UCP | Uncoupling proteins |
| ULK1 | Unc-51-like autophagy activating kinase 1 |