Table 2.
The partition schemes and best-fitting models selected.
| Nucleotide Sequence Alignments | ||
|---|---|---|
| Subset | Subset Partitions | Best Model |
| Partition 1 | COX1_codon1, COX2_codon1, ATP6_codon1, COX3_codon1, CYTB_codon1 | GTR + I + G |
| Partition 2 | COX1_codon2, COX3_codon2, ATP6_codon2, COX2_codon2, CYTB_codon2 | TVM + I + G |
| Partition 3 | COX1_codon3, COX2_codon3, ATP6_codon3, ATP8_codon3 | TIM + G |
| Partition 4 | ATP8_codon2, ND2_codon1, ND3_codon1, ND6_codon1, ATP8_codon1 | GTR + I + G |
| Partition 5 | ND6_codon3, COX3_codon3, ND3_codon3, CYTB_codon3 | HKY + G |
| Partition 6 | ND4L_codon1, ND1_codon1, ND5_codon1, ND4_codon1 | TVM + I + G |
| Partition 7 | ND4L_codon2, ND1_codon2, ND5_codon2, ND4_codon2 | GTR + I + G |
| Partition 8 | ND1_codon3 | HKY + G |
| Partition 9 | ND6_codon2, ND2_codon2, ND3_codon2 | TVM + I + G |
| Partition 10 | ND2_codon3 | TRN + G |
| Partition 11 | ND5_codon3, ND4_codon3, ND4L_codon3 | HKY + G |