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. 2021 May 27;22:393. doi: 10.1186/s12864-021-07691-2

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© The Author(s) 2021

Open AccessThis article is licensed under a Creative Commons Attribution 4.0 International License, which permits use, sharing, adaptation, distribution and reproduction in any medium or format, as long as you give appropriate credit to the original author(s) and the source, provide a link to the Creative Commons licence, and indicate if changes were made. The images or other third party material in this article are included in the article's Creative Commons licence, unless indicated otherwise in a credit line to the material. If material is not included in the article's Creative Commons licence and your intended use is not permitted by statutory regulation or exceeds the permitted use, you will need to obtain permission directly from the copyright holder. To view a copy of this licence, visit http://creativecommons.org/licenses/by/4.0/. The Creative Commons Public Domain Dedication waiver (http://creativecommons.org/publicdomain/zero/1.0/) applies to the data made available in this article, unless otherwise stated in a credit line to the data.

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Fig. 3 — TE content variation at the virulence locus. a Synteny plot of the top locus analyzed in seven completely assembled genomes. The red gradient segments represent the percentage of sequence identity from BLASTN alignments. Darker colors indicate higher identity. b Distance variation between the two genes surrounding the top locus (Zt09_1_01590 and Zt09_1_01591). c The number of different TE families found at least once per isolate at the top locus. d Repeat induced point (RIP) mutation signatures in the topic locus. The Large RIP Affected Regions (LRARs) composite index was calculated using the RIPper tool (van Wyk et al., 2019)