Table 1.
Correlation between transposable elements, coding sequences and histone modifications in the Leptosphaeria maculans ‘brassicae’ genome
CDS | TE | H3K4me2 | H3K9me3 | H3K27me3 | |
---|---|---|---|---|---|
CDS | 1.00 | −0.63 | 0.55 | −0.60 | 0.12 |
TE | −0.63 | 1.00 | −0.58 | 0.87 | −0.25 |
H3K4me2 | 0.55 | −0.58 | 1.00 | −0.57 | −0.11 |
H3K9me3 | −0.60 | 0.87 | −0.57 | 1.00 | −0.24 |
H3K27me3 | 0.12 | -0.25 | −0.11 | −0.24 | 1.00 |
The coverage of transposable elements (TE), coding sequences (CDS) and histone modifications (H3K9me3, H3K27me3, H3K4me2) along the genome of L. maculans ‘brassicae’ was analyzed in 1000-bp sliding windows. A Kendall’s Ƭ correlation analysis was done using R