Table 2.
Correlation between transposable elements, coding sequences and histone modifications in the Leptosphaeria maculans ‘lepidii’ genome
| CDS | TE | H3K4me2 | H3K9me3 | H3K27me3 | |
|---|---|---|---|---|---|
| CDS | 1.00 | −0.22 | 0.25 | −0.25 | −0.05 |
| TE | −0.22 | 1.00 | −0.16 | 0.68 | 0.00 |
| H3K4me2 | 0.25 | −0.16 | 1.00 | −0.16 | −0.23 |
| H3K9me3 | −0.25 | 0.68 | -0.16 | 1.00 | 0.01 |
| H3K27me3 | −0.05 | 0.00 | −0.23 | 0.01 | 1.00 |
The coverage of transposable elements (TE), coding sequences (CDS) and histone modifications (H3K9me3, H3K27me3, H3K4me2) along the genome of L. maculans ‘lepidii’ was analyzed in 1000-bp sliding windows. A Kendall’s Ƭ correlation analysis was done using R