Table 3.

Number of proteinaceous effector genes located in different genomic compartments in Leptosphaeria maculans ‘brassicae’ and Leptosphaeria maculans ‘lepidii’

	L. maculans 'brassicae'								L. maculans 'lepidii'
		Effector genes			Specific effector genes				Effector genes			Specific effector genes
	Number of genes	Number	Proportion	P valuec	Number	Proportion	P valuec	Number of genes	Number	Proportion	P valuec	Number	Proportion	P valuec
Genome	13,047	1,080	8.2.10-2	-	806	6.2.10-2	-	11,272	892	7.9.10-2	-	618	5.5.10-2	-
TE-associated genesa	2,466	289	1.2.10-1	5.6.10-10	210	8.5.10-2	1.4.10-6	641	79	1.2.10-1	3.7.10-8	66	1.10-1	3.4.10-11
H3K4me2 domainsb	7,373	433	5.8.10-2	6.7.10-14	319	4.3.10-2	4.1.10-11	6,065	266	4.4.10-2	3.9.10-14	163	2.7.10-2	5.8.10-14
H3K9me3 domainsb	104	38	3.6.10-1	2.2.10-16	35	3.4.10-1	2.2.10-16	70	14	2.10-1	1.3.10-5	14	2.10-1	1.8.10-9
H3K27me3 domainsb	2,020	286	1.4.10-1	2.2.10-16	200	9.9.10-2	3.6.10-12	1501	217	1.45.10-1	2.2.10-16	152	1.10-1	2.2.10-16
H3K9 + H3K27 me3 domainsb	101	24	2.4.10-1	1.6.10-8	16	1.6.10-1	5.5.10-5	58	18	3.1.10-1	2.8.10-13	14	2.4.10-1	2.2.10-16

^aGenes located up to 2 kb upstream or downstream of a transposable element sequence

^bGenes located in a H3K4me2, H3K9me3, H3K27me3 or H3K9me3/H3K27me3 domain in vitro

^cA X² test was applied to compare proportion of effector genes in the genome and in the genomic compartment analysed