Table 1.
Information about structural properties of the ten models generated after refining the structure of the crude multi-epitope vaccine.
| Model | RMSD | Mol probity | Clash score | Poor rotamers | Rama favored | GALAXY energy |
|---|---|---|---|---|---|---|
| Initial | 0.000 | 4.145 | 180.6 | 6.5 | 73.2 | 52,633.20 |
| MODEL 1 | 2.505 | 1.461 | 2.2 | 0.6 | 92.4 | − 4411.11 |
| MODEL 2 | 2.110 | 1.423 | 1.9 | 0.0 | 92.4 | − 4398.08 |
| MODEL 3 | 2.068 | 1.104 | 0.3 | 0.0 | 91.5 | − 4396.93 |
| MODEL 4 | 1.876 | 1.420 | 1.4 | 0.0 | 89.7 | − 4379.94 |
| MODEL 5 | 2.229 | 1.527 | 2.4 | 0.6 | 91.5 | − 4369.58 |
| MODEL 6 | 2.249 | 1.343 | 1.1 | 0.0 | 90.6 | − 4368.67 |
| MODEL 7 | 2.006 | 1.569 | 2.4 | 0.0 | 90.2 | − 4364.43 |
| MODEL 8 | 2.246 | 1.521 | 2.2 | 0.0 | 90.6 | − 4361.25 |
| MODEL 9 | 2.227 | 1.520 | 1.9 | 0.6 | 89.3 | − 4359.12 |
| MODEL 10 | 1.904 | 1.408 | 1.4 | 0.0 | 90.2 | − 4350.07 |