Table 1.

RNAseq datasets analyzed in this study.

Species	Cells	Dataset	Reference
various	microglia	bulk RNAseq of isolated cells from cortex (GM) (human) or whole brains (mouse)	Geirsdottir et al. (8)
human	brain lysate, microglia	bulk RNAseq of isolated cells from cortex (GM)	Galatro et al. (9)
human	microglia	bulk RNAseq of isolated cells from cortex (GM)	Gosselin et al. (10)
human	microglia	bulk RNAseq of isolated cells from corpus callosum (WM) and occipital cortex (GM) of control and MS donors	Van der Poel et al. (4)
human	microglia	bulk RNAseq of isolated cells from corpus callosum (WM) and occipital cortex (GM) of control donors	Mizee et al. (unpublished data)
mouse	various	bulk RNAseq of (isolated cells from) whole brains (neurons, oligodendrocytes, astrocytes, and microglia)	Zhang et al. (11)
mouse	microglia, macrophages	bulk RNAseq of isolated cells from whole organs	Van Hove et al. (12)
human	iPSC-derived iMPs	bulk RNAseq of isolated cells transplanted into the brain of neonatal mice in vivo or cultured in vitro	Svoboda et al. (13)
mouse	microglia	single cell RNAseq of cells from brains of 5XFAD mice	Keren-Shaul et al. (14)
human	microglia	single cell RNAseq of cells from cortical (GM) biopsies of active MS lesions	Masuda et al. (15)
human	microglia	single cell RNAseq of cells from cortical (GM) surgically resected brain tissue	Olah et al. (16)
human	microglia	bulk RNAseq of isolated cells from cerebral cortex (GM)	Olah et al. (17)

WM, white matter; GM, grey matter.