Comparison with state-of-the-art methods. Average results over 5-fold cross validation are shown. Here, “Spec. Cluster.” means spectral clustering. The standard deviation of 5-fold cross-validation result under all evaluation metrics of our method is smaller than 0.01. Evaluation on human agreement (last row) is based on 128 molecules with 129 pairs of mappings, where mappings in each have the same number of CG beads.

Method	AMI	Cut Prec.	Cut Recall	Cut F1-score
GAP29	0.33	0.47	0.73	0.54
Graclus25	0.45	0.58	0.81	0.65
ClusterNet30	0.52	0.64	0.62	0.58
METIS24	0.56	0.63	0.56	0.58
Cut Cls.	0.67	0.75	0.73	0.73
Spec. Cluster.17	0.73	0.75	0.75	0.75
DSGPM (ours)	0.79	0.80	0.80	0.80
Human	0.81	0.81	0.81	0.81