Table 3.
Comparison of the genome characteristics of genital tract Megasphaera isolates with validly named species of the genus Megasphaera.
Strains: 1, UPII 199-6T; 2, DNF00751; 3, KA00182T; 4, UPII 135-E; 5, BV3C16-1T; 6, HL562; 7, M. cerevisiae DSM 20462; 8, M. elsdenii DSM 20460; 9, M. hexanoica MH; 10, M. indica DSM 25563; 11, M. massiliensis DSM 26228; 12, M. micronuciformis DSM 17226; 13, M. paucivorans DSM 16981; 14, M. stantonii AJH120; 15, M. sueciensis DSM 17042. nd, No data.
|
Megasphaera strains |
BioProject accession |
Genome length (Mb) |
No. of protein coding genes |
No. of tRNA genes |
No. of stable RNA genes |
DNA G+C content (mol%)* |
|---|---|---|---|---|---|---|
|
1 |
PRJNA64689 |
1.64 |
1577 |
49 |
52 |
46.4 |
|
2 |
PRJNA257377 |
1.73 |
1819 |
45 |
47 |
45.9 |
|
3 |
PRJNA272074 |
1.57 |
1514 |
45 |
48 |
38.9 |
|
4 |
PRJNA64691 |
1.65 |
1517 |
50 |
53 |
38.9 |
|
5 |
PRJNA89631 |
2.21 |
2262 |
49 |
52 |
49.8 |
|
6 |
nd |
nd |
nd |
nd |
nd |
nd |
|
7 |
PRJEB19539 |
3.15 |
3354 |
52 |
54 |
44.8 |
|
8 |
PRJNA437124 |
2.48 |
2329 |
66 |
80 |
52.8 |
|
9 |
PRJNA287738 |
2.88 |
2858 |
53 |
60 |
49 |
|
10 |
nd |
nd |
nd |
nd |
nd |
54.9 |
|
11 |
PRJEB645 |
2.66 |
2422 |
56 |
61 |
50.2 |
|
12 |
nd |
nd |
nd |
nd |
nd |
46.4 |
|
13 |
PRJEB16204 |
2.91 |
2915 |
51 |
53 |
40.2 |
|
14 |
PRJNA471687 |
2.65 |
2590 |
57 |
67 |
52.6 |
|
15 |
nd |
nd |
nd |
nd |
nd |
43.1 |
*DNA G+C content (mol%) for M. indica, M. micronuciformis, and M. sueciensis were obtained from the original references [4, 5, 7] as genomes were not available. Genome information is also not available for M. vaginalis HL562.