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. 2021 May 28;21:157. doi: 10.1186/s12866-021-02232-z

Table 4.

Distribution of clusters with greater that four cases in South Africa by provinces (2014–2018)

Family SIT 24-loci MIRU-VNTR cluster Cluster size WC Number of cases per province NC NW
EC FS GP KZN MP
Beijing 1 234,233,352,844,425,173,453,823 270 262 1 2 2 3
235,213,342,844,425,163,353,933 113 100 2 3 2 6
244,232,352,644,425,173,354,624 65 60 2 2 1
235,213,342,644,425,163,353,933 55 45 4 2 1 1 1 1
244,232,352,644,425,173,354,624 44 44
235,213,342,834,425,163,353,933 21 14 1 3 1 2
244,233,352,242,425,173,353,824 17 17
244,232,352,644,425,174,354,624 16 16
234,233,352,444,425,173,453,823 15 1 2 4 8
244,232,352,644,425,174,356,624 14 13 1
244,232,352,644,425,193,356,622 7 1 3 1 2
244,233,352,844,425,183,353,823 12 12
235,213,342,644,425,163,353,933 12
244,232,352,644,425,174,354,624 11 11
2,352,133,426(8)44425163353933 10 9 1
235,213,342,744,425,163,353,933 7 1 1 1
244,232,352,544,425,174,354,624 9 4 2 3
244,233,352,844,425,183,356,223 7 1 1
234,233,352,444,425,173,453,223 8 1 1 6
244,232,352,444,425,173,354,624 7 7
244,232,352,644,425,173,354,224 3 1 2 1
244,233,352,644,425,183,353,823 4 2 1
245,233,252,844,425,173,356,823 1 3 2 1
235,213,342,834,425,123,353,933 7
244,233,352,644,425,182,353,823 7
244,232,352,644,425,172,354,624 6 6
235,213,342,644,425,163,353,133 5 1
244,213,352,444,425,171,353,823 2 3 1
244,233,352,544,425,174,353,823 1 2 1 1 1
244,233,352,844,425,174,356,823 1 3 2
244,232,352,644,425,193,354,622 5 4 1
244,233,352,544,425,173,346,823 5
244,233,352,544,425,174,356,823 1 1 1 2
244,233,352,844,425,183,353,223 5
235,113,342,644,425,163,353,832 5
2,352,133,426,444,251,633,531,133 5
244,033,352,544,425,173,353,823 5
244,223,352,644,425,183,353,823 5
244,232,352,544,425,173,354,624 5
244,233,352,544,425,174,353,823 5
244,233,352,544,425,183,353,823 5
EAI1_SOM 48 2,225,342,112,393,246,223,347,211 48 1 4 43
222,534,242,393,246,223,347,211 17 2 12 3
2,225,342,112,393,246,223,346,211 6 1 5
2,225,342,112,393,246,223,347,111 5 1 3 1
LAM4 60 134,244,332,224,126,153,332,832 31 2 9 13 2 3 1
134,244,332,224,126,153,332,232 13 3 5 2 1 2
LAM3 33 243,234,342,324,226,153,131,722 15 10 1 4
244,234,342,424,226,153,136,722 7 1 3 1 1 1
244,234,342,424,226,153,131,722 5 2 1 2
X1 119 243,224,332,334,425,153,333,732 28 28
X3 92 243,244,332,234,425,153,334,932 15 2 4 9
243,244,332,334,425,153,334,832 13 4 1 2 2 1 3
253,254,332,333,425,153,323,832 8 8
243,244,332,334,425,153,224,832 6 6
243,247,432,334,424,153,335,832 5 5
H3 50 223,245,432,234,425,183,333,732 10 2 2 2 4
H N/A 123,233,332,834,425,153,333,632 11 1 1 1 8
T1 53 224,243,122,334,215,153,335,222 8 4 2 2
719 244,234,342,424,226,153,136,222 7 2 1 4
53 224,243,122,234,225,153,331,422 6 4 2
S 324,343,212,324,225,143,336,222 8 1 1 4 2
324,343,212,824,225,143,336,222 6 1 3 1 1
Unknown genotype N/A 243,244,332,334,425,153,334,832 5 5

SIT Shared International Type, WC Western Cape, EC Eastern Cape, FS Free State, GP, Gauteng, KZN KwaZulu-Natal, MP Mpumalanga, NC Northern Cape, NW North West