Comparison between MetaTrans and GLORYx, SyGMa and BioTransformer for various prediction windows.

	Method	At least one metabolite (%)	At least half metabolites (%)	All metabolites (%)	Total identified metabolites	Output size	Precision (%)	Recall (%)
Top 5	MetaTrans	80.0	61.5	29.2	76	324	23.5	42.5
	GLORYx	64.6	35.4	16.9	54	325	16.6	30.2
	SyGMa	72.3	55.4	29.2	76	325	23.4	42.4
Top 10	MetaTrans	95.4	80.0	44.6	103	687	15.0	57.5
	GLORYx	80.0	64.6	27.7	93	650	14.3	51.9
	SyGMa	87.7	75.4	43.1	105	650	16.2	58.7
Top 13	MetaTrans	95.4	81.5	46.2	109	908	12.0	60.9
	GLORYx	86.2	76.9	41.5	108	851	12.8	60.3
	SyGMa	89.2	78.5	44.6	115	842	13.6	64.2
	BioTransformer	87.7	78.5	44.6	115	842	13.5	64.2
Top 20	MetaTrans	96.9	86.2	46.2	116	1334	8.7	64.8
	GLORYx	92.3	86.2	52.3	132	1259	10.5	73.7
	SyGMa	90.8	84.6	49.2	127	1284	9.9	70.9