Table 3. Summary about features performed by software BPGA, Roary and PAN2HGENE.

Features description	BPGA	Roary	PAN2HGENE
Database for processing step control.	-	-	OK
Execution to the command line.	OK	OK	OK
Plotting graphs about the results.	OK	OK—through external tools	OK
It has an intuitive graphical interface.	-	-	OK
Graphical results that are easy to analyze.	-	-	OK
Standardization of annotation in two different annotation systems.	-	-	OK
Maximizes the representation of the gene content of the organisms present in the analysis.	-	-	OK
It is possible to resume processing from the stop point in the event of failures.	-	-	OK