Table 1. Genes identified by CLIPper analysis.
The table shows genes that were identified as significant peaks by CLIPper in the two 8 hpi samples, the three 18 hpi samples, or all five samples. Genes with overlapping peak regions in different replicates within either the 8 or 18 hpi grouping are indicated with asterisks.
| 8 hpi (1+2) | 18 hpi (1+2+3) | Shared | |||||
|---|---|---|---|---|---|---|---|
| LAMC2* | RPL37A* | RPS8 | SLC38A2* | TIMP2 | TFRC | SEMA3C | SCD* |
| SCD* | DCBLD2 | CAPN2 | TMBIM6 | DSG2 | CXCL1 | TFPI2 | LDHA |
| LDHA* | TM4SF1* | VIM* | ATP2A2* | LMAN1 | CXCL5* | MET* | CD44 |
| CD44* | CXCL5* | ITGB1* | TMED2* | RPS19* | SLC7A11 | SLC39A14* | ATP2A2 |
| RPS3 | RPS14 | VCL | RPS29 | PDIA6 | OSMR* | TMEM66* | ZFP36L1* |
| PTGES3 | CANX* | TM9SF3 | CNIH1* | RTN4* | ITGA2 | ADAM9* | RPS19* |
| ATP2A2 | SEMA3C | SCD* | HIF1A* | ITGAV* | IL6ST | ASPH | DCBLD2 |
| RPLP0 | SERPINE1* | EIF4G2 | ZFP36L1* | TFPI | MAP1B | RPL30 | TM4SF1* |
| ZFP36L1* | AKR1B10* | LDHA* | B2M* | PRNP | NT5E | ANXA1 | CXCL5* |
| HSP90AA1 | SLC39A14* | CD44 | PTPLAD1* | RHOA | TMED7 | GOLM1 | CANX* |
| SRSF1* | RPS19* | FTH1* | IQGAP1 | DCBLD2* | TGFBI* | MAGT1 | SEMA3C |
| ACTG1* | CNTN1 | CLTC* | PLOD2* | CANX* | SLC39A14* | ||
| SLC38A1 | CCDC47* | TM4SF1* | |||||