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. 2020 Sep 24;11(41):11322–11330. doi: 10.1039/d0sc04520a

Thermodynamic parameters of 2′-OCF3 modified RNA obtained by UV melting profile analysis (including unmodified and 2′-SCF3 modified reference RNAs)a.

Sequence (5′ → 3′) T m [°C] ΔG°298 [kcal mol−1] ΔH° [kcal mol−1] ΔS° [cal mol−1 K−1]
GGUCGACC 59.1 −14.3 −72.0 −193
GGUCGCC 52.7 −12.6 −69.1 −189
GAAGG-GCAA-CCUUCG 73.3 −6.0 −46.0 −134
GAGG-GCAA-CCUUCG 70.3 −5.8 −46.7 −137
GAInline graphicGG-GCAA-CCUUCG30 57.4 −5.5 −57.9 −176
GAAGG-GCAA-CUUCG 66.8 −4.9 −41.7 −124
GAAGG-GCAA-CInline graphicUUCG29 53.3 −4.4 −50.4 −154
GAAGG-GCA-CCUUCG 74.0 −8.3 −60.9 −177
a

A̲ 2′-OCF3 adenosine, C̲ 2′-OCF3 cytidine, Inline graphic 2′-SCF3 adenosine,30Inline graphic 2′-SCF3 cytidine.29 Buffer: 10 mM Na2HPO4, 150 mM NaCl, pH 7.0. ΔH and ΔS values were obtained by van't Hoff analysis according to ref. 37 and 38. Errors for ΔH and ΔS, arising from non-infinite cooperativity of two-state transitions and from the assumption of a temperature-independent enthalpy, are typically 10–15%. Additional error is introduced when free energies are extrapolated far from melting transitions; errors for ΔG are typically 3–5%.