Table 2.
Epitope selection and antigenicity prediction (VaxiJen server)
| Protein with Accession ID | MHC supertype | T. no. of peptides | Epitope | Score (threshold ≥ 1.2) | Antigenicity (threshold ≥ 0.4) | Final inference |
|---|---|---|---|---|---|---|
| AKE78836.1 (RNA-dependent RNA polymerase) | A1 | 3 out of 974 | VTAICSFLY | 3.3965 | − 0.0304 | Rejected |
| STELVETDY | 3.1603 | 0.9790 | Selected | |||
| MSGAAFCVY | 2.2002 | 0.1125 | Rejected | |||
| B27 | 2 out of 974 | RRFEFALAR | 2.0592 | 0.7796 | Selected | |
| YRQRVIAEK | 1.7339 | 0.0313 | Rejected | |||
| A3 | 1 out of 974 | TMMVKAFQK | 1.5739 | − 0.0706 | Rejected | |
| AIK23438.1 (coat protein) | A1 | 3 out of 330 | NTDVVNVSV | 1.6524 | 0.5657 | Selected |
| HAARIFQRY | 1.5090 | − 0.4455 | Rejected | |||
| KTFTDGVAY | 1.4328 | − 0.6610 | Rejected | |||
| B27 | 3 out of 330 | FRWGIWDNF | 1.9050 | 0.9657 | Selected | |
| RRRANNRRR | 1.6007 | − 0.2403 | Rejected | |||
| CRWSVRLSV | 1.4410 | 1.1667 | Selected | |||
| A3 | 2 out of 330 | KLAKPATTK | 1.7445 | − 0.7774 | Rejected | |
| TLLWTSSGK | 1.5645 | 0.4178 | Selected |