TABLE 8.

Performance comparison over mass spectrometry dataset in $AUC$.

Allele	$\mathtt{MHCflurry}$	$\mathtt{NetMHC4}\mathtt{.0}$	$\mathtt{NetMHCpan3}\mathtt{.0}$	$\mathtt{ConvM}-\mathit{e}$
HLA-A*01:01	0.9873	0.9854	0.9881	0.9864
HLA-A*02:01	0.9836	0.9775	0.9798	0.9820
HLA-A*02:03	0.9903	0.9888	0.9879	0.9878
HLA-A*02:07	0.9630	0.9176	0.9600	0.9339
HLA-A*03:01	0.9714	0.9632	0.9648	0.9678
HLA-A*24:02	0.9905	0.9857	0.9895	0.9917
HLA-A*29:02	0.9580	0.9549	0.9651	0.9648
HLA-A*31:01	0.9276	0.9408	0.9483	0.9204
HLA-A*68:02	0.8101	0.8039	0.8232	0.7930
HLA-B*35:01	0.8765	0.8786	0.8744	0.8859
HLA-B*44:02	0.9796	0.9770	0.9791	0.9808
HLA-B*44:03	0.9765	0.9696	0.9723	0.9768
HLA-B*51:01	0.9314	0.9275	0.9195	0.9339
HLA-B*54:01	0.9255	0.9301	0.9341	0.9264
HLA-B*57:01	0.8799	0.8667	0.8756	0.8842

The best performance for each allele is bold. The second best performance for each allele is underlined.