Skip to main content
. 2021 May 21;2(2):100551. doi: 10.1016/j.xpro.2021.100551
REAGENT or RESOURCE SOURCE IDENTIFIER
Chemicals, peptides, and recombinant proteins

40% Acrylamide solution Sigma Cat#A4058
2% Bis-acrylamide solution Thermo Fisher Cat#BP1404-250
Sulfo-SANPAH Thermo Fisher Cat#22589
FluoSpheres™ Carboxylate-Modified Microspheres, 0.2 μm, yellow-green fluorescent (505/515), 2% solids Invitrogen Cat#F8811
Rat tail collagen type I Sigma Cat#C3867
HEPES, free acid J.T. Baker Cat#4018-04
(3-Aminopropyl)triethoxysilane Sigma Cat#3648
Ammonium persulfate Fisher Cat#BP17925
TEMED Sigma Cat#T9281
25% Glutaraldehyde Sigma Cat#G6257
Leibovitz's L-15 Medium, no phenol red Thermo Fisher Cat#21083027
High-glucose DMEM medium Thermo Fisher Cat#11965092
Foundation Fetal Bovine Serum, lot: A37C48A Gemini Bio-Prod Cat#900108
Brain heart infusion (BHI) BD Cat#211059
Phosphate buffered saline (PBS), no calcium, no magnesium Fisher Cat#SH30028FS
Gentamicin sulfate MP Biomedicals Cat#194530
Chloramphenicol Sigma Cat#C0378-5G
Streptomycin sulfate Thermo Fisher Cat#3810-74-0
DifcoTM agar, granulated BD Cat#214530
0.25% Trypsin-EDTA, phenol red Thermo Fisher Cat#25200056
Hoechst 33342, trihydrochloride, trihydrate - 10 mg/μL Invitrogen Cat#H3570
Formaldehyde 16% EM grade Electron Microscopy Sciences Cat#15710-S

Experimental models: Cell lines

MDCK II Bakardjiev Lab (Faralla et al., 2018) N/A
MDCK II E-cadherin-RFP Nelson Lab (Perez et al., 2008) N/A

Experimental models: Organisms/strains

L. monocytogenes: L.m.-ActAp::mTagRFP Theriot Lab(Ortega et al., 2017) N/A
L. monocytogenes: L.m.-GFP Theriot Lab (Ortega et al., 2017) N/A

Software and algorithms

ImageJ (Schneider et al., 2012) https://imagej.nih.gov/ij/
Micro-Manager N/A https://www.micro-manager.org/
MATLAB MathWorks http://www.mathworks.com/products/matlab/?requestedDomain=www.mathworks.com
Mound volume measurement code This paper https://gitlab.com/theriot_lab/theriot-toolbox/infection-mound-volume
Laser wounding recoil displacement code This paper https://gitlab.com/theriot_lab/infection_mound_laser_wounding
GraphPad Prism v6 GraphPad http://www.graphpad.com/scientific-software/prism/
Imaris Bitplane https://imaris.oxinst.com/

Other

24-Well plates with glass bottom MatTek Cat#P24G-1.5-13-F
T-75 Flasks Falcon Cat#353118
Plastic cuvettes Sarstedt Cat#67.746
50 mL Conical tubes Falcon Cat#352070
15 mL Conical tubes Falcon Cat#352196
Disposable serological pipettes (1 mL, 2 mL, 5 mL, 10 mL) Falcon various
Bacterial cell spreader Sigma Cat#Z376779
Pipette tips 1-200 μL Denville Cat#P1122
Pipette tips 101–1000 μL Denville Cat#P1126
Powder-free examination gloves Microflex Cat#XC-310
0.2 μm Vacuum bottle top filters Thermo Fisher Cat#566-0020
20 mL Syringes BD Cat#302830
0.2 μm Syringe filters Thermo Fisher Cat#723-2520
10 cm Culture plates Falcon Cat#351029
Biosafety cabinet Baker Cat#SG504
Hemocytometer Sigma Cat#Z359629
Bacterial incubator Thermo Scientific Cat#IGS180
CO2 culture incubator NuAire Cat#NU-8700
Vacuum chamber/degasser Bel-Art Cat#42025
Cage incubator (for the microscope) Haison Custom
Pipettor Drummond Cat#4-000-110
Pipet tips (10 μL, 200 μL, 1000 μL) Gilson Cat#F144802, F123601, F123602
pH meter Mettler Toledo Cat#30019028
1 L Flask Fisherbrand Cat#FB5011000
Autoclave Amsco Cat#3021
Stir magnet plate Bellco Cat#7760-06000
Magnet stirring bars Bellco Cat#1975-00100
Spectrophotometer Beckman Cat#DU 640
Firefly system Rapp OptoElectronic Cat#UGA-42 Firefly