Chemicals, peptides, and recombinant proteins |
|
40% Acrylamide solution |
Sigma |
Cat#A4058 |
2% Bis-acrylamide solution |
Thermo Fisher |
Cat#BP1404-250 |
Sulfo-SANPAH |
Thermo Fisher |
Cat#22589 |
FluoSpheres™ Carboxylate-Modified Microspheres, 0.2 μm, yellow-green fluorescent (505/515), 2% solids |
Invitrogen |
Cat#F8811 |
Rat tail collagen type I |
Sigma |
Cat#C3867 |
HEPES, free acid |
J.T. Baker |
Cat#4018-04 |
(3-Aminopropyl)triethoxysilane |
Sigma |
Cat#3648 |
Ammonium persulfate |
Fisher |
Cat#BP17925 |
TEMED |
Sigma |
Cat#T9281 |
25% Glutaraldehyde |
Sigma |
Cat#G6257 |
Leibovitz's L-15 Medium, no phenol red |
Thermo Fisher |
Cat#21083027 |
High-glucose DMEM medium |
Thermo Fisher |
Cat#11965092 |
Foundation Fetal Bovine Serum, lot: A37C48A |
Gemini Bio-Prod |
Cat#900108 |
Brain heart infusion (BHI) |
BD |
Cat#211059 |
Phosphate buffered saline (PBS), no calcium, no magnesium |
Fisher |
Cat#SH30028FS |
Gentamicin sulfate |
MP Biomedicals |
Cat#194530 |
Chloramphenicol |
Sigma |
Cat#C0378-5G |
Streptomycin sulfate |
Thermo Fisher |
Cat#3810-74-0 |
DifcoTM agar, granulated |
BD |
Cat#214530 |
0.25% Trypsin-EDTA, phenol red |
Thermo Fisher |
Cat#25200056 |
Hoechst 33342, trihydrochloride, trihydrate - 10 mg/μL |
Invitrogen |
Cat#H3570 |
Formaldehyde 16% EM grade |
Electron Microscopy Sciences |
Cat#15710-S |
|
Experimental models: Cell lines |
|
MDCK II |
Bakardjiev Lab (Faralla et al., 2018) |
N/A |
MDCK II E-cadherin-RFP |
Nelson Lab (Perez et al., 2008) |
N/A |
|
Experimental models: Organisms/strains |
|
L. monocytogenes: L.m.-ActAp::mTagRFP |
Theriot Lab(Ortega et al., 2017) |
N/A |
L. monocytogenes: L.m.-GFP |
Theriot Lab (Ortega et al., 2017) |
N/A |
|
Software and algorithms |
|
ImageJ |
(Schneider et al., 2012) |
https://imagej.nih.gov/ij/ |
Micro-Manager |
N/A |
https://www.micro-manager.org/ |
MATLAB |
MathWorks |
http://www.mathworks.com/products/matlab/?requestedDomain=www.mathworks.com |
Mound volume measurement code |
This paper |
https://gitlab.com/theriot_lab/theriot-toolbox/infection-mound-volume |
Laser wounding recoil displacement code |
This paper |
https://gitlab.com/theriot_lab/infection_mound_laser_wounding |
GraphPad Prism v6 |
GraphPad |
http://www.graphpad.com/scientific-software/prism/ |
Imaris |
Bitplane |
https://imaris.oxinst.com/ |
|
Other |
|
24-Well plates with glass bottom |
MatTek |
Cat#P24G-1.5-13-F |
T-75 Flasks |
Falcon |
Cat#353118 |
Plastic cuvettes |
Sarstedt |
Cat#67.746 |
50 mL Conical tubes |
Falcon |
Cat#352070 |
15 mL Conical tubes |
Falcon |
Cat#352196 |
Disposable serological pipettes (1 mL, 2 mL, 5 mL, 10 mL) |
Falcon |
various |
Bacterial cell spreader |
Sigma |
Cat#Z376779 |
Pipette tips 1-200 μL |
Denville |
Cat#P1122 |
Pipette tips 101–1000 μL |
Denville |
Cat#P1126 |
Powder-free examination gloves |
Microflex |
Cat#XC-310 |
0.2 μm Vacuum bottle top filters |
Thermo Fisher |
Cat#566-0020 |
20 mL Syringes |
BD |
Cat#302830 |
0.2 μm Syringe filters |
Thermo Fisher |
Cat#723-2520 |
10 cm Culture plates |
Falcon |
Cat#351029 |
Biosafety cabinet |
Baker |
Cat#SG504 |
Hemocytometer |
Sigma |
Cat#Z359629 |
Bacterial incubator |
Thermo Scientific |
Cat#IGS180 |
CO2 culture incubator |
NuAire |
Cat#NU-8700 |
Vacuum chamber/degasser |
Bel-Art |
Cat#42025 |
Cage incubator (for the microscope) |
Haison |
Custom |
Pipettor |
Drummond |
Cat#4-000-110 |
Pipet tips (10 μL, 200 μL, 1000 μL) |
Gilson |
Cat#F144802, F123601, F123602 |
pH meter |
Mettler Toledo |
Cat#30019028 |
1 L Flask |
Fisherbrand |
Cat#FB5011000 |
Autoclave |
Amsco |
Cat#3021 |
Stir magnet plate |
Bellco |
Cat#7760-06000 |
Magnet stirring bars |
Bellco |
Cat#1975-00100 |
Spectrophotometer |
Beckman |
Cat#DU 640 |
Firefly system |
Rapp OptoElectronic |
Cat#UGA-42 Firefly |