Table 3.
Significant heading date QTL information from best environment. For each QTL, information from the experiment where that QTL had the largest estimated effect (Best Env) is given. The average difference in phenotype between two RILs homozygous for alternative alleles at each QTL is given as twice the estimated allele effect of the LA95135 allele (2α), along with proportion of additive variation associated with each QTL (pA). Vrn-A3 only has a significant effect within the half of the population homozygous Ppd-D1b
| QTL Name | Candidate Gene | Best Env | Peak Marker | Position CI | LOD | 2α (days) | pA |
|---|---|---|---|---|---|---|---|
| Qncb.HD-2D | Ppd-D1 | Ral 19 | Ppd-D1 | 59-64 Mb | 48.6 | 3.4 | 0.67 |
| Qncb.HD-3A | FT2 | Pla 19 | S3A_434822203 | 121-571 Mb | 13.0 | -2.6 | 0.12 |
| Qncb.HD-4D | Rht-D1 | Kin 19 | Rht-D1 | 0-352 Mb | 4.85 | 0.9 | 0.06 |
| Qncb.HD-5A | NA | Pla 19 | S5A_169302619 | 51.6-435 Mb | 14.1 | -2.7 | 0.15 |
| Qncb.HD-5B | NA | Kin 19 | S5B_511010094 | 436-476 Mb | 7.7 | -1.3 | 0.08 |
| Qncb.HD-7A | Vrn-A3 | Ral 18 (Ppd-D1b) | S7A_72104395 | 57.7-85.9 Mb | 4.23 | NA | NA |