Table 2.
Multi-species detection of dicistronic tRNA–mRNA transcripts using DiRT to analyse publicly available RNA-seq experiments accessible from the Sequence Read Archive (SRA)
| Species | SRA Project number | RNA-seq libraries analysed (average reads/library) | Tissue | Number of tRNA isodecoders forming dicistronic transcripts | Number of dicistronic tRNA–mRNA candidates identified |
|---|---|---|---|---|---|
|
Oryza sativa ssp. japonica |
PRJNA403975 PRJNA301554 PRJNA350792 |
17 (67 M) |
Leaf, root |
14 | 29 |
| Brachypodium distachyon |
PRJNA293888 PRJNA371381 PRJNA383406 |
12 (57 M) |
Leaf, root |
2 | 3 |
| Arabidopsis thaliana |
PRJNA271927 PRJNA241198 PRJNA246731 PRJNA318918 |
24 (46 M) |
Leaf, root, shoot |
9 | 11 |
| Vitis vinifera |
PRJNA311966 PRJNA383160 PRJNA342391 PRJNA260535 PRJNA307079 PRJNA386484 PRJNA433817 PRJNA268857 |
44 (30 M) |
Leaf, root, berry |
15 | 39 |
| Azolla Filiculoides |
PRJNA430527 PRJNA264391 |
9 (40 M) |
Whole plant, root |
2 | 4 |
| Salvinia cucullata | PRJNA430459 | 6 (43 M) | Leaf | 1 | 2 |
| Selaginella moellendorfii |
PRJEB29012 PRJNA271595 |
9 (31 M) |
Leaf, root |
23 | 49 |
| Physcomitrella patens |
PRJNA417704 PRJNA397394 PRJNA294412 PRJNA259146 PRJNA259147 |
17 (32 M) |
Whole plant, protonema, chloronemata |
0 | 0 |
| Marchantia polymorpha |
PRJDB4420 PRJNA433456 |
11 (21 M) |
Thallus, antheridiophore, archegoniophore |
0 | 0 |