Table 1.
Statistics for assembly and annotation of the Coptis chinensis genome.
| Characteristic | Number | Size |
|---|---|---|
| Assembly | ||
| Estimated genome size | 1046.91 Mb | |
| Scaffolds | 425 | 958.20 Mb |
| N50 of scaffolds | 63 | 4.53 Mb |
| Longest scaffolds | 19.44 Mb | |
| Contigs | 940 | 955.01 Mb |
| N50 of contigs | 187 | 1.58 Mb |
| Longest contigs | 8.97 Mb | |
| Annotation | ||
| Repetitive sequences | 62.23% | 596.28 Mb |
| Transposable element | 60.75% | 582.07 Mb |
| Protein-coding genes | 34,109 | |
| Mean transcript length | 3846.49 bp | |
| Mean coding sequence length | 1031.05 bp | |
| Noncoding RNAs | 5424 | 615,322 bp |