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. 2021 May 18;8:652530. doi: 10.3389/fmolb.2021.652530

FIGURE 1.

FIGURE 1

Comparison of local assessment metrics for the atomic model of alcohol dehydrogenase (color bar shows the correspondence with the FDR scores assigned, residues in red have FDR scores around 0.8 or worse, yellow around 0.9, and green around 1.0). The metrics are calculated only for the backbone atoms. (A) Per-residue plot of MapQ, SMOC, SCCC, PHENIX, FSC-Q, and FDR backbone scores for the chain A of the atomic model T0104EM060_2 from the EMDB model challenge, the red boxes highlight the residues selected for detailed analysis in the panels below. For Gly 86 (B), Leu 116 (C), Ala 162 (D), and Asn 259 (E), the panel shows a table with values of scores obtained with each metric and corresponding Z-scores; the residue fit in the target map (EMD-0406, gray) displayed at the recommended contour level and rendered in UCSF Chimera; and the residue fit in map as modeled in the reference (PDB ID: 6nbb.2).