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. Author manuscript; available in PMC: 2022 Apr 22.
Published in final edited form as: J Med Chem. 2021 Apr 12;64(8):4333–4358. doi: 10.1021/acs.jmedchem.0c01686

Table 1.

Competitive Binding Assays and Conditions

Assay BCL6BTB a Co-repressor Reference
ELISA FLAG-BCL6BTB Biotinylated BCOR peptideb 38, 42, 50
TR-FRET His tagged BCL6BTBc Hilyte647 SMRT peptided 60, 91
Biotinylated BCL6BTB TAMRA-peptide 4e 72
Biotinylated BCL6BTB FITC-BCOR peptidef 83
Trx-His tagged BCL6BTBg AF633-BCOR peptideh 95
Avi-tag biotinylated BCL6BTBi BCOR ULight peptidej 69
GST-BCL6BTBk His tagged SMRT peptidel 70
FP Avi-tag biotinylated BCL6BTBi FP-labeled BCOR peptidem 69
BCL6BTB AF633-BCOR peptideh 95
AlphaLisa His tagged BCL6BTB c Biotinylated BCOR peptideb 73
IPC Avi-tag biotinylated BCL6BTBi 37 (BCL6-FP) 78
a

BCL6BTB (5-129)

b

Biotinylated BCOR peptide = Ac-RSEIISTAPSSWVVPGP-Lys-(ε-Biotin-(AC5)2)-OH

c

His tagged BCL6BTB = Histidine (His) tagged BCL6BTB (5-129) triple mutant (C8Q, C67R, and C84N)

d

Hilyte™ Fluor 647 SMRT peptide H1426W = Hilyte™ Fluor 647-LVATVKEAGRSIWEIPR

e

TAMRA peptide 4 = TAMRA-Abu(4)-VWYTDIRMRDWM-OH

f

FITC, fluorescein isothiocyanate (Note: In the paper, BodipyFL-labeled BCOR peptide, but in SI FITC-BCOR peptide)

g

Trx, Thioredoxin

h

Alexa Fluor 633-BCOR peptide = Ac-RSEIISTAPSSWVVPGP-Cys-Alexa Fluor 633-CONH2

i

Avi-tag, amino acid sequence GLNDIFEAQKIEWHE

j

BCOR ULight peptide = Ac-RSEIISTAPSSWVVPGP-Cys-ULight

k

GST, Glutathione S-transferase

l

His tagged SMRT peptide = H6-LVATVKEAGRSIHEIPR

m

FP-labeled BCOR peptide = 5-TAMRA-RSEIISTAPSSWVVPGP