Table 1.
Competitive Binding Assays and Conditions
Assay | BCL6BTB a | Co-repressor | Reference |
---|---|---|---|
ELISA | FLAG-BCL6BTB | Biotinylated BCOR peptideb | 38, 42, 50 |
TR-FRET | His tagged BCL6BTBc | Hilyte647 SMRT peptided | 60, 91 |
Biotinylated BCL6BTB | TAMRA-peptide 4e | 72 | |
Biotinylated BCL6BTB | FITC-BCOR peptidef | 83 | |
Trx-His tagged BCL6BTBg | AF633-BCOR peptideh | 95 | |
Avi-tag biotinylated BCL6BTBi | BCOR ULight peptidej | 69 | |
GST-BCL6BTBk | His tagged SMRT peptidel | 70 | |
FP | Avi-tag biotinylated BCL6BTBi | FP-labeled BCOR peptidem | 69 |
BCL6BTB | AF633-BCOR peptideh | 95 | |
AlphaLisa | His tagged BCL6BTB c | Biotinylated BCOR peptideb | 73 |
IPC | Avi-tag biotinylated BCL6BTBi | 37 (BCL6-FP) | 78 |
BCL6BTB (5-129)
Biotinylated BCOR peptide = Ac-RSEIISTAPSSWVVPGP-Lys-(ε-Biotin-(AC5)2)-OH
His tagged BCL6BTB = Histidine (His) tagged BCL6BTB (5-129) triple mutant (C8Q, C67R, and C84N)
Hilyte™ Fluor 647 SMRT peptide H1426W = Hilyte™ Fluor 647-LVATVKEAGRSIWEIPR
TAMRA peptide 4 = TAMRA-Abu(4)-VWYTDIRMRDWM-OH
FITC, fluorescein isothiocyanate (Note: In the paper, BodipyFL-labeled BCOR peptide, but in SI FITC-BCOR peptide)
Trx, Thioredoxin
Alexa Fluor 633-BCOR peptide = Ac-RSEIISTAPSSWVVPGP-Cys-Alexa Fluor 633-CONH2
Avi-tag, amino acid sequence GLNDIFEAQKIEWHE
BCOR ULight peptide = Ac-RSEIISTAPSSWVVPGP-Cys-ULight
GST, Glutathione S-transferase
His tagged SMRT peptide = H6-LVATVKEAGRSIHEIPR
FP-labeled BCOR peptide = 5-TAMRA-RSEIISTAPSSWVVPGP