Skip to main content
PLOS ONE logoLink to PLOS ONE
. 2021 Jun 1;16(6):e0250368. doi: 10.1371/journal.pone.0250368

Prevalence of elevated liver transaminases and their relationship with alcohol use in people living with HIV on anti-retroviral therapy in Uganda

J Morgan Freiman 1,¤, Robin Fatch 2, Debbie Cheng 3, Nneka Emenyonu 2, Christine Ngabirano 4, Carolina Geadas 1, Julian Adong 4, Winnie R Muyindike 4,5, Benjamin P Linas 1, Karen R Jacobson 1, Judith A Hahn 2,6,*
Editor: Isabelle Chemin7
PMCID: PMC8168875  PMID: 34061870

Abstract

Background

Isoniazid preventive therapy (IPT) reduces tuberculosis reactivation and mortality among persons living with HIV (PLWH), yet hepatotoxicity concerns exclude “regular and heavy alcohol drinkers” from IPT. We aimed to determine the prevalence of elevated liver transaminases among PLWH on antiretroviral therapy (ART) who engage in alcohol use.

Setting

The Immune Suppression Syndrome Clinic of Mbarara, Uganda.

Methods

We defined elevated liver transaminases as ≥1.25 times (X) the upper limit of normal (ULN) for alanine aminotransferase (ALT) and/or aspartate aminotransferase (AST). We evaluated the associations of current alcohol use and other variables of interest (sex, body mass index, and ART regimen) with elevated transaminases at study screening, using multivariable logistic regression to obtain adjusted odds ratios (aOR) and 95% confidence intervals (CI).

Results

Among 1301 participants (53% female, median age 39 years, 67.4% current alcohol use), 18.8% (95% CI: 16.8–21.1) had elevated transaminases pre-IPT, with few (1.1%) severe (≥5X the ULN). The proportion with any elevation among those currently using alcohol and those abstaining was 22.3% and 11.6%, respectively (p<0.01). In multivariable analyses, those currently using alcohol had higher odds of elevated transaminases compared to those abstaining (aOR 1.65, 95% CI 1.15–2.37) as did males compared to females (aOR 2.68, 95% CI 1.90–3.78).

Conclusions

Pre-IPT elevated transaminases among PLWH receiving ART were common, similar to prior estimates, but severe elevations were rare. Current drinking and male sex were independently associated with elevated transaminases. Further research is needed to determine the implications of such transaminase elevations and alcohol use on providing IPT.

Introduction

Tuberculosis (TB) is the leading cause of mortality for people living with HIV (PLWH) worldwide accounting for nearly one-third of all HIV deaths [1]. Isoniazid preventive therapy (IPT) is known to reduce mortality in PLWH and is currently recommended along with anti-retroviral therapy (ART) for those without active TB disease [2]. However, “regular and heavy alcohol consumption” is listed as a contraindication of IPT. This is concerning, as heavy alcohol consumption is associated with a three-fold increase in risk of TB disease [3] and with slower treatment response and higher mortality [47]. We previously showed, through a Markov simulation model, that the benefits of 6 months of IPT outweigh the toxicity risks in PLWH who drink alcohol when given in high TB burden settings [8]. However, this model was based on limited data on the rate of liver toxicity in individuals receiving IPT.

The risk of IPT hepatotoxicity among PLWH on ART is not well established. A previous study reported nearly a 4-fold increase in hepatotoxicity risk among severely immunosuppressed PLWH who had baseline liver transaminase elevations (≥1.25 the upper limit of normal [ULN]) in alanine aminotransferase (ALT) or asparatate aminotransferase (AST) prior to starting IPT [9]. Thus pre-IPT transaminase elevations are important to consider in populations that are candidates for IPT. Transaminase elevation prevalence is believed to be 10–22% in the general population [10] and 13–43% of PLWH, independent of ART status [9, 1116]. Alcohol is known to be hepatotoxic, and data from studies of PLWH in the US suggest heavy alcohol use is associated with increased transaminases [17, 18]. Yet the proportion of elevated transaminases among PLWH who use alcohol in TB endemic settings has not been established. Other observed contributors to transaminase elevations include ART use, male sex, viral co-infections (hepatitis B and C) [11], and liver diseases such as non-alcoholic fatty liver disease (NAFLD) [12, 13]. Thus, we evaluated the prevalence of elevated liver transaminases in PLWH on ART in Uganda and whether factors including current alcohol use (the main exposure of interest), sex, ART regimen, or body mass index (BMI) (an indicator of NAFLD), were associated with pre-IPT transaminase elevations.

Methods

Study population

The Alcohol Drinker’s Exposure to Preventive Therapy for Tuberculosis (ADEPTT) cohort study is a one-arm trial of IPT among PLWH with latent TB infection at the Immune Suppression Syndrome (ISS) clinic of the Mbarara Regional Referral Hospital (MRRH), Mbarara, Uganda (NCT NCT03302299). The sample for this study was persons undergoing intake-screening for the ADEPTT study. Persons were referred to the study by clinic staff and were determined eligible for transaminase screening if they were adults ≥18 years of age, fluent in English or Runyakole (the local language), HIV-infected, currently taking ART (>6 months), and living within 2 hours of the ISS clinic. Pregnant women, participants on nevirapine, those with history of active TB or taking TB medications, those on anti-convulsive medications, and those living more than 2 hours from the clinic or with plans to move, were excluded. The ADEPTT study aims to examine IPT hepatoxicity among those currently using alcohol and those abstaining in a 2 to 1 ratio, therefore the screening sample is also enriched for self-reported current (prior 3 months) alcohol use. Participants who reported abstaining from alcohol for at least the past year were included as abstainers, while those who reported alcohol use within the past year but not in the past 3 months were excluded. The study activities were approved by the Ethics review boards of Mbarara University of Science and Technology, University of California San Francisco, Boston University, and Boston Medical Center. All participants gave written informed consent.

Outcome variable

We conducted ALT and AST testing, measured in units per liter, using venous blood samples at the MRRH ISS Clinic laboratory. We defined elevated transaminases as ≥1.25 times (X) the ULN for either ALT or AST (or both). We also calculated elevation grade, using the greater of the ALT and AST values, with Grade 1 defined as 1.25- <2.5X the ULN, Grade 2 defined as 2.5- <5X the ULN, Grade 3 defined as 5- <10X the ULN, and Grade 4 defined as ≥10X the ULN, per the Division of AIDS definitions [19].

Independent variables

Current alcohol use, the main independent variable, was measured at ADEPTT study screening as in the prior 3 months versus past (>1 year) or never (S1 File). We also assessed sex, and age. Height and weight were retrieved from the electronic medical records of the ISS clinic to calculate BMI. BMI was categorized as “underweight” (<18.5), “normal weight” (18.5 - <25), “overweight” (25 - <30), “obese” (≥30). ART regimen at study screening, or at the clinic visit prior to screening, was also retrieved from clinic records; ART regimen was defined as a 3-category variable: “Dolutegravir-based”, “non-nucleotide reverse trascriptase inhibitor (NNRTI)-based”, or “protease inhibitor (PI)-based”. A subset of participants had participated in previous alcohol/HIV research at the ISS Clinic in which unhealthy alcohol use was measured [20, 21]. This measure was a combination of self-reported alcohol use, using the Alcohol Use Disorders Identification Test–Consumption (AUDIT-C, modified to cover the prior 3 months) and the alcohol biomarker phosphatidylethanol (PEth), a phospholipid that forms only in the presence of alcohol [22]. We combined self-report with PEth to overcome previously noted under-reporting in this population [23]. The definition of prior unhealthy alcohol use was AUDIT-C positive (≥3 for women and ≥4 for men), and/or PEth result ≥50 ng/mL at any prior study visit.

Statistical analyses

We estimated the prevalence of transaminase elevations overall and by current alcohol use, sex, BMI, and ART regimen. To examine associations between independent variables, i.e. current alcohol use (main exposure of interest), BMI, sex, and ART regimen, and the outcome, transaminase elevations, we used multiple logistic regression models and calculated odds ratios (OR) and 95% confidence intervals (CI), including the 4 independent variables of interest (i.e. current alcohol use at screening, sex, BMI, and ART regimen) and controlling for age as a potential confounder. We conducted an additional exploratory analysis among those recruited from our prior research, to explore prior unhealthy alcohol use. For this model, we replaced current alcohol use at screening with prior unhealthy alcohol use as the predictor of interest. We used multiple imputation (using 25 imputed datasets using the above variables) to impute height values because height was missing from 86 ISS clinic records. The multivariable results are using the imputed data. All analyses were performed using Stata 14.2.

Results

There were 1301 persons tested for transaminate elevations during ADEPTT study screening, from May 2018 through January 2020. The mean age was 40 years (standard deviation 9.8), and more than half were female (53.0%) (Table 1). More than one-third of the participants with BMI data were overweight (37.3%) with a BMI ≥25. Nearly two-thirds reported current alcohol use (n = 877, 67.4%), by design. Nearly three-fourths of participants were on a NNRTI-based ART regimen (n = 960, 73.8%), with 17.9% (n = 233) on a Dolutegravir-based regimen and 8.3% (n = 108) on a PI-based regimen. AUDIT-C and/or PEth data were available from our prior research for 330 participants, and 175 (53.0%) were categorized as having prior unhealthy alcohol use.

Table 1. Participant characteristics of those screened for the ADEPTT Study, with transminase results at screening (n = 1301).

Characteristic N (%) or median (IQR)
Self-reported current alcohol use
No, abstained for ≥1 year 424 (32.6%)
Yes, prior 3 months 877 (67.4%)
Sex
Male 612 (47.0%)
Female 689 (53.0%)
BMI (n = 1215) 23.4 (21.0–27.0)
< 18.5 72 (5.9%)
18.5 - < 25 690 (56.8%)
25 - < 30 279 (23.0%)
> = 30 174 (14.3%)
Age 39 (32–46)
18–35 465 (35.7%)
36–43 407 (31.3%)
44+ 429 (33.0%)
ART regimen
Dolutegravir-based 233 (17.9%)
NNRTI-based 960 (73.8%)
PI-based 108 (8.3%)
Prior unhealthy alcohol use? (AUDIT-C hazardous and/or PEth > = 50) (n = 330)
No 155 (47.0%)
Yes 175 (53.0%)
ALT
< 1.25x ULN 1132 (87.0%)
> = 1.25 - <5x ULN 164 (12.6%)
> = 5 - <10x ULN 3 (0.2%)
> = 10x ULN 2 (0.2%)
AST
< 1.25x ULN 1103 (84.8%)
> = 1.25 - <5x ULN 186 (14.3%)
> = 5 - <10x ULN 11 (0.9%)
> = 10x ULN 1 (0.1%)
ALT/AST grade (highest grade of the 2)
Grade 0 (<1.25x ULN) 1056 (81.2%)
Grade 1 (1.25 - <2.5x ULN) 192 (14.8%)
Grade 2 (2.5 - <5x ULN) 39 (3.0%)
Grade 3 (5- <10x ULN) 12 (0.9%)
Grade 4 (> = 10x ULN) 2 (0.2%)

In the total sample (n = 1301), 245 participants (18.8%; 95% CI: 16.8–21.1) had any transaminase elevations. Of the 245 with any elevations, 192 (78.4%) were Grade 1 (1.25- <2.5X the ULN), 39 (15.9%) were Grade 2 (2.5- <5X the ULN), 12 (4.9%) were Grade 3 (5- <10X the ULN), and 2 (0.8%) were Grade 4 (≥10X the ULN); the prevalence of a Grade 3 or 4 elevation overall was 1.1%. The proportion with any transaminase elevations among those with current alcohol use was 22.3% (95% CI: 19.7%-25.2%), compared to 11.6% (95% CI: 8.8%-15.0%) among those abstaining (Table 2).

Table 2. Transaminase elevations (> = 1.25x ULN) by participant characteristics, among persons screened for the ADEPTT Study (n = 1301).

Characteristic n/N (%, 95% CI) with any elevations Unadjusted OR (95% CI) Adjusted OR* (95% CI)
Self-reported current alcohol use
No, abstained for ≥1 year 49/424 (11.6, 8.8–15.0) 1.00 1.00
Yes, prior 3 months 196/877 (22.3, 19.7–25.2) 2.20 (1.57, 3.09) 1.65 (1.15, 2.37)
Sex
Male 162/612 (26.5, 23.1–30.1) 2.63 (1.96, 3.52) 2.68 (1.90, 3.78)
Female 83/689 (12.0, 9.8–14.7) 1.00 1.00
BMI (n = 1215)
< 18.5 20/72 (27.8, 18.5–39.5) 1.00 1.00
18.5 - < 25 131/690 (19.0, 16.2–22.1) 0.61 (0.35, 1.06) 0.58 (0.33, 1.03)
25 - < 30 54/279 (19.4, 15.1–24.4) 0.62 (0.34, 1.13) 0.73 (0.39, 1.36)
> = 30 23/174 (13.2, 8.9–19.2) 0.40 (0.20, 0.78) 0.58 (0.28, 1.19)
Age 0.94 per 10 years (0.82, 1.09) 0.91 per 10 years
(0.79, 1.06)
18–35 87/465 (18.7, 15.4–22.5)
36–43 82/407 (20.1, 16.5–24.3)
44+ 76/429 (17.7, 14.4–21.6)
ART regimen
Dolutegravir-based 49/233 (21.0, 16.2–26.8) 1.07 (0.75, 1.52) 0.76 (0.53, 1.13)
NNRTI-based 192/960 (20.0, 17.6–22.7) 1.00 1.00
PI-based 4/108 (3.7, 1.4–9.6) 0.15 (0.06, 0.42) 0.13 (0.05, 0.36)
Prior unhealthy alcohol use?** (n = 330)
No 20/155 (12.9, 8.4–19.2) 1.00 ---
Yes 42/175 (24.0, 18.2–31.0) 2.13 (1.19, 3.82) ---

*adjusted model based on multiple imputation

**AUDIT-C hazardous and/or PEth > = 50

In multivariable analyses adjusting for the independent variables of interest plus age (Table 2), those with current alcohol use had 1.65 times the odds of any transaminase elevations compared to those abstaining (95% CI: 1.15–2.37) and males had an increased odds of transaminase elevations compared to females (adjusted odds ratio (aOR) 2.68, 95% CI: 1.90–3.78). Compared to NNRTI-based regimen, those on a PI-based regimen had a decreased odds of elevations (aOR 0.13, 95% CI: 0.05–0.36). There was no evidence of an association between BMI or age and transaminase elevations.

In sensitivity analyses of transaminase elevations limited to prior study participants (n = 330), the aOR for prior unhealthy alcohol use was 1.63 (95% CI: 0.88–3.05), after adjusting for sex, BMI, ART, and age.

Discussion

PLWH who drink alcohol are at a particularly high risk for TB morbidity and mortality, yet current guidelines exclude persons with heavy alcohol use from IPT due to hepatotoxicity concerns. In this Ugandan cohort of PLWH receiving ART enriched for persons consuming alcohol, the proportion of individuals with pre-IPT transaminase elevations, i.e. those ≥1.25X the ULN, (19%) consistent with previous studies of PLWH which ranged from 13–43% [9, 1116]. In addition, we observed very few (1%) transaminase elevations in the severe range, i.e. at or above 5X the ULN, consistent with other studies of PLWH that reported fewer than 2% exhibiting such elevations [1216].

Those reporting consuming alcohol in the prior 3 months had increased odds of transaminase elevations compared to those reporting abstaining. Male sex was also significantly associated with increased odds for transaminase elevations. This is similar to what has been described in a population of persons with HIV not on ART [12], as well as in the population of persons not infected with HIV. We did not detect a significant association between BMI and transaminase elevations, but persons on PI-based regimens had lower odds of transaminase elevations, consistent with the low toxicity profile of PI-based regimens. The overall low proportion of high grade elevations may be due to our exclusion of patients on nevirapine, a known hepatotoxic drug.

There are limitations to this study. First, the exclusion of patients on nevirapine may have reduced the prevalence of transaminase elevations. For those with cirrhosis or advanced viral hepatitis, the synthesis of ALT and AST may have been falsely low, though this may be rare [24]. The classification of current alcohol use was based on self-report, making it subjective to recall bias [23]. The current drinking variable did not allow us to discern between any and unhealthy drinking. However, we performed a sensitivity analysis on a subgroup of participants with a previously measured objective alcohol biomarker, and the results were similar to those for self-reported current alcohol use. We did not assess the duration of time on ART prior to intake screen or evaluate immunosuppression, which previous studies reported are risks for transaminase elevations [11, 13]. However, we did limit the sample to those on ART for at least 6 months, thereby avoiding transient elevations of treatment initiation. Further, we did not assess the concomitant use of other potentially hepatotoxic medications, remedies, or conditions. In addition, because we found few cases with serious transaminase elevations, we were unable to examine correlates of this outcome. We emphasize that this analysis focused on transaminase elevations prior to IPT initiation. Our future research from the ADEPTT Study will examine the occurrence of IPT hepatotoxicity and analyze its associations with baseline transaminase abnormalities and alcohol use.

Overall, our findings are consistent with prior studies that showed that mild liver transaminase elevations are common among PLWH, while extreme elevations are uncommon. It is unknown whether these mild elevations increase the risk for IPT hepatotoxicity in the setting of ART treatment, i.e. immunocompetence. Future research needs to address whether active alcohol use increases the risk for hepatotoxicity during IPT and, if found, to investigate strategies to mitigate risk.

Supporting information

S1 File. Screening form used in the ADEPTT study.

(PDF)

Acknowledgments

We would like to thank Mbarara University of Science and Technology, Mbarara Regional Referral Hospital, the staff of the Mbarara Regional Referral Hospital Immune Suppression Syndrome Clinic, our research and administrative teams at UCSF and MUST. We give special thanks to the study participants for their time and contribution to this work.

Data Availability

Hahn, Judith (2021), Prevalence of elevated liver transaminases and their relationship with alcohol use in people living with HIV on anti-retroviral therapy in Uganda, Dryad, Dataset, https://doi.org/10.7272/Q66H4FPZ.

Funding Statement

We received funding from the National Institute on Alcohol Abuse and Alcoholism U01 AA020776 (Judith A. Hahn), K24 AA022586 (Judith A. Hahn), and U24 AA020779 (Debbie Cheng), and the National Institute of Allergy and Infectious Disease P30 AI042853 (Debbie Cheng), and R01 AI119037 (Karen R Jacobson). The funders had no role in study design, data collection and analysis, decision to publish, or preparation of the manuscript.

References

  • 1.TB causes 1 in 3 HIV deaths: World Health Organization; 2018 [cited 2020 May 26]. Available from: https://www.who.int/hiv/mediacentre/news/hiv-tb-patient-centred-care/en/.
  • 2.Organization WH. Latent tuberculosis infection: Updated and consolidated guidelines for programmatic management. Geneva: World Health Organization, 2018. Contract No.: Licence: CC BY-NC-SA 3.0 IGO. [PubMed] [Google Scholar]
  • 3.Imtiaz S, Shield KD, Roerecke M, Samokhvalov AV, Lönnroth K, Rehm J. Alcohol consumption as a risk factor for tuberculosis: meta-analyses and burden of disease. Eur Respir J. 2017;50(1). Epub 2017/07/15. 10.1183/13993003.00216-2017 [DOI] [PMC free article] [PubMed] [Google Scholar]
  • 4.Rehm J, Samokhvalov AV, Neuman MG, Room R, Parry C, Lonnroth K, et al. The association between alcohol use, alcohol use disorders and tuberculosis (TB). A systematic review. BMC public health. 2009;9:450. Epub 2009/12/08. 10.1186/1471-2458-9-450 1471-2458-9-450 [pii]. [DOI] [PMC free article] [PubMed] [Google Scholar]
  • 5.Volkmann T, Moonan PK, Miramontes R, Oeltmann JE. Tuberculosis and excess alcohol use in the United States, 1997–2012. Int J Tuberc Lung Dis. 2015;19(1):111–9. Epub 2014/12/19. 10.5588/ijtld.14.0516 [DOI] [PMC free article] [PubMed] [Google Scholar]
  • 6.Volkmann T, Moonan PK, Miramontes R, Oeltmann JE. Excess Alcohol Use and Death among Tuberculosis Patients in the United States, 1997–2012. Journal of tuberculosis research. 2016;4(1):18–22. Epub 2016/04/08. 10.4236/jtr.2016.41003 [DOI] [PMC free article] [PubMed] [Google Scholar]
  • 7.Amoakwa K, Martinson NA, Moulton LH, Barnes GL, Msandiwa R, Chaisson RE. Risk factors for developing active tuberculosis after the treatment of latent tuberculosis in adults infected with human immunodeficiency virus. Open Forum Infect Dis. 2015;2(1):ofu120. Epub 2015/06/03. 10.1093/ofid/ofu120 ofu120 [pii]. [DOI] [PMC free article] [PubMed] [Google Scholar]
  • 8.Freiman JM, Jacobson KR, Muyindike WR, Horsburgh CR, Ellner JJ, Hahn JA, et al. Isoniazid Preventive Therapy for People With HIV Who Are Heavy Alcohol Drinkers in High TB-/HIV-Burden Countries: A Risk-Benefit Analysis. J Acquir Immune Defic Syndr. 2018;77(4):405–12. Epub 2017/12/15. 10.1097/QAI.0000000000001610 [DOI] [PMC free article] [PubMed] [Google Scholar]
  • 9.Ngongondo M, Miyahara S, Hughes MD, Sun X, Bisson GP, Gupta A, et al. Hepatotoxicity During Isoniazid Preventive Therapy and Antiretroviral Therapy in People Living With HIV With Severe Immunosuppression: A Secondary Analysis of a Multi-Country Open-Label Randomized Controlled Clinical Trial. J Acquir Immune Defic Syndr. 2018;78(1):54–61. Epub 2018/02/07. 10.1097/QAI.0000000000001641 [DOI] [PMC free article] [PubMed] [Google Scholar]
  • 10.Radcke S, Dillon JF, Murray AL. A systematic review of the prevalence of mildly abnormal liver function tests and associated health outcomes. Eur J Gastroenterol Hepatol. 2015;27(1):1–7. Epub 2014/11/08. 10.1097/MEG.0000000000000233 . [DOI] [PubMed] [Google Scholar]
  • 11.Iddi S, Minja CA, Silago V, Benjamin A, Mpesha J, Henerico S, et al. High Human Immunodeficiency Virus (HIV) Viral Load and Coinfection with Viral Hepatitis Are Associated with Liver Enzyme Abnormalities among HIV Seropositive Patients on Antiretroviral Therapy in the Lake Victoria Zone, Tanzania. AIDS research and treatment. 2019;2019:6375714. Epub 2019/07/06. 10.1155/2019/6375714 [DOI] [PMC free article] [PubMed] [Google Scholar]
  • 12.Nagu TJ, Kanyangarara M, Hawkins C, Hertmark E, Chalamila G, Spiegelman D, et al. Elevated alanine aminotransferase in antiretroviral-naïve HIV-infected African patients: magnitude and risk factors. HIV Med. 2012;13(9):541–8. Epub 2012/03/16. 10.1111/j.1468-1293.2012.01006.x [DOI] [PMC free article] [PubMed] [Google Scholar]
  • 13.Weidle PJ, Moore D, Mermin J, Buchacz K, Were W, Downing R, et al. Liver enzymes improve over twenty-four months of first-line non-nucleoside reverse transcriptase inhibitor-based therapy in rural Uganda. AIDS Patient Care STDS. 2008;22(10):787–95. Epub 2008/09/10. 10.1089/apc.2008.0020 . [DOI] [PubMed] [Google Scholar]
  • 14.Hoffmann CJ, Charalambous S, Thio CL, Martin DJ, Pemba L, Fielding KL, et al. Hepatotoxicity in an African antiretroviral therapy cohort: the effect of tuberculosis and hepatitis B. AIDS. 2007;21(10):1301–8. Epub 2007/06/05. 10.1097/QAD.0b013e32814e6b08 . [DOI] [PubMed] [Google Scholar]
  • 15.Crum-Cianflone N, Collins G, Medina S, Asher D, Campin R, Bavaro M, et al. Prevalence and factors associated with liver test abnormalities among human immunodeficiency virus-infected persons. Clin Gastroenterol Hepatol. 2010;8(2):183–91. Epub 2009/10/06. 10.1016/j.cgh.2009.09.025 [DOI] [PMC free article] [PubMed] [Google Scholar]
  • 16.Mulu W, Gidey B, Chernet A, Alem G, Abera B. Hepatotoxicity and associated risk factors in HIV-infected patients receiving antiretroviral therapy at Felege Hiwot Referral Hospital, Bahirdar, Ethiopia. Ethiopian journal of health sciences. 2013;23(3):217–26. Epub 2013/12/07. 10.4314/ejhs.v23i3.4 [DOI] [PMC free article] [PubMed] [Google Scholar]
  • 17.Bonacini M. Alcohol use among patients with HIV infection. Ann Hepatol. 2011;10(4):502–7. Epub 2011/09/14. . [PubMed] [Google Scholar]
  • 18.Tsui JI, Cheng DM, Libman H, Bridden C, Saitz R, Samet JH. Risky alcohol use and serum aminotransferase levels in HIV-infected adults with and without hepatitis C. J Stud Alcohol Drugs. 2013;74(2):266–70. Epub 2013/02/07. 10.15288/jsad.2013.74.266 [DOI] [PMC free article] [PubMed] [Google Scholar]
  • 19.U.S. Department of Health and Human Services, National Institutes of Health, National Institute of Allergy and Infectious Diseases, Division of AIDS. Division of AIDS (DAIDS) Table for Grading the Severity of Adult and Pediatric Adverse Events 2017 [updated July, 2017]. Corrected Version 2.1:[Available from: https://rsc.niaid.nih.gov/sites/default/files/daidsgradingcorrectedv21.pdfpdf.
  • 20.Hahn JA, Cheng DM, Emenyonu NI, Lloyd-Travaglini C, Fatch R, Shade SB, et al. Alcohol Use and HIV Disease Progression in an Antiretroviral Naive Cohort. J Acquir Immune Defic Syndr. 2018;77(5):492–501. Epub 2018/01/06. 10.1097/QAI.0000000000001624 [DOI] [PMC free article] [PubMed] [Google Scholar]
  • 21.Hahn JA, Emenyonu NI, Fatch R, Muyindike WR, Kekiibina A, Carrico AW, et al. Declining and rebounding unhealthy alcohol consumption during the first year of HIV care in rural Uganda, using phosphatidylethanol to augment self-report. Addiction. 2016;111(2):272–9. Epub 2015/09/19. 10.1111/add.13173 [DOI] [PMC free article] [PubMed] [Google Scholar]
  • 22.Hahn JA, Anton RF, Javors MA. The Formation, Elimination, Interpretation, and Future Research Needs of Phosphatidylethanol for Research Studies and Clinical Practice. Alcohol Clin Exp Res. 2016;40(11):2292–5. Epub 2016/10/21. 10.1111/acer.13213 [DOI] [PMC free article] [PubMed] [Google Scholar]
  • 23.Muyindike WR, Lloyd-Travaglini C, Fatch R, Emenyonu NI, Adong J, Ngabirano C, et al. Phosphatidylethanol confirmed alcohol use among ART-naive HIV-infected persons who denied consumption in rural Uganda. AIDS Care. 2017:1–6. Epub 2017/03/11. 10.1080/09540121.2017.1290209 . [DOI] [PMC free article] [PubMed] [Google Scholar]
  • 24.Oh RC, Hustead TR, Ali SM, Pantsari MW. Mildly Elevated Liver Transaminase Levels: Causes and Evaluation. Am Fam Physician. 2017;96(11):709–15. Epub 2018/02/13. . [PubMed] [Google Scholar]

Decision Letter 0

Isabelle Chemin

17 Feb 2021

PONE-D-20-39571

Prevalence of Elevated Liver Transaminases and Their Relationship with Alcohol Use in People Living with HIV on Anti-Retroviral Therapy in Uganda

PLOS ONE

Dear Dr. Hahn,

Thank you for submitting your manuscript to PLOS ONE. After careful consideration, we feel that it has merit but does not fully meet PLOS ONE’s publication criteria as it currently stands. Therefore, we invite you to submit a revised version of the manuscript that addresses the points raised during the review process.

We noted that you have referred to data not shown in line 164. Please note that PLOS does not permit references to “data not shown” (http://journals.plos.org/plosone/s/data-availability). Please provide the relevant data within the manuscript, the Supporting Information files, or in a public repository. If the data are not a core part of the research study being presented, please remove any references to these data.

Please submit your revised manuscript by Mar 28 2021 11:59PM. If you will need more time than this to complete your revisions, please reply to this message or contact the journal office at plosone@plos.org. When you're ready to submit your revision, log on to https://www.editorialmanager.com/pone/ and select the 'Submissions Needing Revision' folder to locate your manuscript file.

Please include the following items when submitting your revised manuscript:

  • A rebuttal letter that responds to each point raised by the academic editor and reviewer(s). You should upload this letter as a separate file labeled 'Response to Reviewers'.

  • A marked-up copy of your manuscript that highlights changes made to the original version. You should upload this as a separate file labeled 'Revised Manuscript with Track Changes'.

  • An unmarked version of your revised paper without tracked changes. You should upload this as a separate file labeled 'Manuscript'.

If you would like to make changes to your financial disclosure, please include your updated statement in your cover letter. Guidelines for resubmitting your figure files are available below the reviewer comments at the end of this letter.

If applicable, we recommend that you deposit your laboratory protocols in protocols.io to enhance the reproducibility of your results. Protocols.io assigns your protocol its own identifier (DOI) so that it can be cited independently in the future. For instructions see: http://journals.plos.org/plosone/s/submission-guidelines#loc-laboratory-protocols

We look forward to receiving your revised manuscript.

Kind regards,

Sara Fuentes Perez

Staff editor

On behalf of:

Isabelle Chemin, PhD

Academic Editor

PLOS ONE

Journal Requirements:

When submitting your revision, we need you to address these additional requirements.

1. Please ensure that your manuscript meets PLOS ONE's style requirements, including those for file naming. The PLOS ONE style templates can be found at

https://journals.plos.org/plosone/s/file?id=wjVg/PLOSOne_formatting_sample_main_body.pdf and

https://journals.plos.org/plosone/s/file?id=ba62/PLOSOne_formatting_sample_title_authors_affiliations.pdf

2. We note that you have stated that you will provide repository information for your data at acceptance. Should your manuscript be accepted for publication, we will hold it until you provide the relevant accession numbers or DOIs necessary to access your data. If you wish to make changes to your Data Availability statement, please describe these changes in your cover letter and we will update your Data Availability statement to reflect the information you provide.

3.Thank you for stating the following in the Competing Interests section:

"Potential conflict of interest:

Dr. Debbie Cheng serves on Data Safety and Monitoring Boards for Janssen. Her work for Janssen is unrelated to the submitted work and Janssen had no role in any aspect of this work."

Please confirm that this does not alter your adherence to all PLOS ONE policies on sharing data and materials, by including the following statement: "This does not alter our adherence to  PLOS ONE policies on sharing data and materials.” (as detailed online in our guide for authors http://journals.plos.org/plosone/s/competing-interests).  If there are restrictions on sharing of data and/or materials, please state these. Please note that we cannot proceed with consideration of your article until this information has been declared.

Please include your updated Competing Interests statement in your cover letter; we will change the online submission form on your behalf.

Please know it is PLOS ONE policy for corresponding authors to declare, on behalf of all authors, all potential competing interests for the purposes of transparency. PLOS defines a competing interest as anything that interferes with, or could reasonably be perceived as interfering with, the full and objective presentation, peer review, editorial decision-making, or publication of research or non-research articles submitted to one of the journals. Competing interests can be financial or non-financial, professional, or personal. Competing interests can arise in relationship to an organization or another person. Please follow this link to our website for more details on competing interests: http://journals.plos.org/plosone/s/competing-interests

4. We note that you have included the phrase “data not shown” in your manuscript. Unfortunately, this does not meet our data sharing requirements. PLOS does not permit references to inaccessible data. We require that authors provide all relevant data within the paper, Supporting Information files, or in an acceptable, public repository. Please add a citation to support this phrase or upload the data that corresponds with these findings to a stable repository (such as Figshare or Dryad) and provide and URLs, DOIs, or accession numbers that may be used to access these data. Or, if the data are not a core part of the research being presented in your study, we ask that you remove the phrase that refers to these data.

5. Please include additional information regarding the survey or questionnaire used in the study and ensure that you have provided sufficient details that others could replicate the analyses. For instance, if you developed a questionnaire as part of this study and it is not under a copyright more restrictive than CC-BY, please include a copy, in both the original language and English, as Supporting Information, or include a citation if it has been published previously.

6. In the Methods, please discuss whether and how the questionnaire was validated and/or pre-tested. If these did not occur, please provide the rationale for not doing so.

[Note: HTML markup is below. Please do not edit.]

Reviewers' comments:

Reviewer's Responses to Questions

Comments to the Author

1. Is the manuscript technically sound, and do the data support the conclusions?

The manuscript must describe a technically sound piece of scientific research with data that supports the conclusions. Experiments must have been conducted rigorously, with appropriate controls, replication, and sample sizes. The conclusions must be drawn appropriately based on the data presented.

Reviewer #1: Yes

**********

2. Has the statistical analysis been performed appropriately and rigorously?

Reviewer #1: Yes

**********

3. Have the authors made all data underlying the findings in their manuscript fully available?

The PLOS Data policy requires authors to make all data underlying the findings described in their manuscript fully available without restriction, with rare exception (please refer to the Data Availability Statement in the manuscript PDF file). The data should be provided as part of the manuscript or its supporting information, or deposited to a public repository. For example, in addition to summary statistics, the data points behind means, medians and variance measures should be available. If there are restrictions on publicly sharing data—e.g. participant privacy or use of data from a third party—those must be specified.

Reviewer #1: Yes

**********

4. Is the manuscript presented in an intelligible fashion and written in standard English?

PLOS ONE does not copyedit accepted manuscripts, so the language in submitted articles must be clear, correct, and unambiguous. Any typographical or grammatical errors should be corrected at revision, so please note any specific errors here.

Reviewer #1: Yes

**********

5. Review Comments to the Author

Please use the space provided to explain your answers to the questions above. You may also include additional comments for the author, including concerns about dual publication, research ethics, or publication ethics. (Please upload your review as an attachment if it exceeds 20,000 characters)

Reviewer #1: Assuming the sample is appropriate, this is a straight forward descriptive statistical application of the use of multiple logistic regression models and calculated odds ratios (OR) and 95% confidence intervals (CI), on an imputed sample. It appears that only about 7 percent of the sample had to be imputed. The results appear to follow from the analysis presentation of Table 2, in that current drinking and male sex were independently associated with elevated transaminases.

**********

6. PLOS authors have the option to publish the peer review history of their article (what does this mean?). If published, this will include your full peer review and any attached files.

If you choose “no”, your identity will remain anonymous but your review may still be made public.

Do you want your identity to be public for this peer review? For information about this choice, including consent withdrawal, please see our Privacy Policy.

Reviewer #1: No

[NOTE: If reviewer comments were submitted as an attachment file, they will be attached to this email and accessible via the submission site. Please log into your account, locate the manuscript record, and check for the action link "View Attachments". If this link does not appear, there are no attachment files.]

While revising your submission, please upload your figure files to the Preflight Analysis and Conversion Engine (PACE) digital diagnostic tool, https://pacev2.apexcovantage.com/. PACE helps ensure that figures meet PLOS requirements. To use PACE, you must first register as a user. Registration is free. Then, login and navigate to the UPLOAD tab, where you will find detailed instructions on how to use the tool. If you encounter any issues or have any questions when using PACE, please email PLOS at figures@plos.org. Please note that Supporting Information files do not need this step.

PLoS One. 2021 Jun 1;16(6):e0250368. doi: 10.1371/journal.pone.0250368.r002

Author response to Decision Letter 0


1 Mar 2021

PONE-D-20-39571

Prevalence of Elevated Liver Transaminases and Their Relationship with Alcohol Use in People Living with HIV on Anti-Retroviral Therapy in Uganda

PLOS ONE

Dear Ms. Perez and Dr. Chemin,

Thank you for your review of out manuscript. Rebuttals to your questions are provided below.

1. Please ensure that your manuscript meets PLOS ONE's style requirements, including those for file naming.

We have done so.

2. We note that you have stated that you will provide repository information for your data at acceptance. Should your manuscript be accepted for publication, we will hold it until you provide the relevant accession numbers or DOIs necessary to access your data. If you wish to make changes to your Data Availability statement, please describe these changes in your cover letter and we will update your Data Availability statement to reflect the information you provide.

The data are available at https://datadryad.org/stash/share/Tp491NLcUe8qTcDADYiI8RtiuIFiq9lm6RAOm9zbvBIDOI# 10.7272/Q66H4FPZ

3.Thank you for stating the following in the Competing Interests section:

"Potential conflict of interest:

Dr. Debbie Cheng serves on Data Safety and Monitoring Boards for Janssen. Her work for Janssen is unrelated to the submitted work and Janssen had no role in any aspect of this work."

This does not alter our adherence to PLOS ONE policies on sharing data and materials.

4. We note that you have included the phrase “data not shown” in your manuscript. Unfortunately, this does not meet our data sharing requirements.

This was in error. These data are included in the above-mentioned file. We meant to note that we were not including a separate table for the analyses, but the results were presented iwhtin the paragraph. We have removed the phrase from the manuscript.

5. Please include additional information regarding the survey or questionnaire used in the study and ensure that you have provided sufficient details that others could replicate the analyses. For instance, if you developed a questionnaire as part of this study and it is not under a copyright more restrictive than CC-BY, please include a copy, in both the original language and English, as Supporting Information, or include a citation if it has been published previously.

We have included the screening form, that collected participant age, sex, and current alcohol use as file S1.

6. In the Methods, please discuss whether and how the questionnaire was validated and/or pre-tested. If these did not occur, please provide the rationale for not doing so.

The only data from a questionnaire were from the standardized AUDIT-C scale, which is referenced in the text.

Reviewers' comments:

Reviewer #1: Assuming the sample is appropriate, this is a straight forward descriptive statistical application of the use of multiple logistic regression models and calculated odds ratios (OR) and 95% confidence intervals (CI), on an imputed sample. It appears that only about 7 percent of the sample had to be imputed. The results appear to follow from the analysis presentation of Table 2, in that current drinking and male sex were independently associated with elevated transaminases.

No edits are needed in response to this comment.

Attachment

Submitted filename: Response to Reviewers.docx

Decision Letter 1

Isabelle Chemin

6 Apr 2021

Prevalence of Elevated Liver Transaminases and Their Relationship with Alcohol Use in People Living with HIV on Anti-Retroviral Therapy in Uganda

PONE-D-20-39571R1

Dear Dr. Hahn,

We’re pleased to inform you that your manuscript has been judged scientifically suitable for publication and will be formally accepted for publication once it meets all outstanding technical requirements.

Within one week, you’ll receive an e-mail detailing the required amendments. When these have been addressed, you’ll receive a formal acceptance letter and your manuscript will be scheduled for publication.

An invoice for payment will follow shortly after the formal acceptance. To ensure an efficient process, please log into Editorial Manager at http://www.editorialmanager.com/pone/, click the 'Update My Information' link at the top of the page, and double check that your user information is up-to-date. If you have any billing related questions, please contact our Author Billing department directly at authorbilling@plos.org.

If your institution or institutions have a press office, please notify them about your upcoming paper to help maximize its impact. If they’ll be preparing press materials, please inform our press team as soon as possible -- no later than 48 hours after receiving the formal acceptance. Your manuscript will remain under strict press embargo until 2 pm Eastern Time on the date of publication. For more information, please contact onepress@plos.org.

Kind regards,

Isabelle Chemin, PhD

Academic Editor

PLOS ONE

Additional Editor Comments (optional):

Reviewers' comments:

Reviewer's Responses to Questions

Comments to the Author

1. If the authors have adequately addressed your comments raised in a previous round of review and you feel that this manuscript is now acceptable for publication, you may indicate that here to bypass the “Comments to the Author” section, enter your conflict of interest statement in the “Confidential to Editor” section, and submit your "Accept" recommendation.

Reviewer #1: All comments have been addressed

**********

2. Is the manuscript technically sound, and do the data support the conclusions?

The manuscript must describe a technically sound piece of scientific research with data that supports the conclusions. Experiments must have been conducted rigorously, with appropriate controls, replication, and sample sizes. The conclusions must be drawn appropriately based on the data presented.

Reviewer #1: (No Response)

**********

3. Has the statistical analysis been performed appropriately and rigorously?

Reviewer #1: (No Response)

**********

4. Have the authors made all data underlying the findings in their manuscript fully available?

The PLOS Data policy requires authors to make all data underlying the findings described in their manuscript fully available without restriction, with rare exception (please refer to the Data Availability Statement in the manuscript PDF file). The data should be provided as part of the manuscript or its supporting information, or deposited to a public repository. For example, in addition to summary statistics, the data points behind means, medians and variance measures should be available. If there are restrictions on publicly sharing data—e.g. participant privacy or use of data from a third party—those must be specified.

Reviewer #1: (No Response)

**********

5. Is the manuscript presented in an intelligible fashion and written in standard English?

PLOS ONE does not copyedit accepted manuscripts, so the language in submitted articles must be clear, correct, and unambiguous. Any typographical or grammatical errors should be corrected at revision, so please note any specific errors here.

Reviewer #1: (No Response)

**********

6. Review Comments to the Author

Please use the space provided to explain your answers to the questions above. You may also include additional comments for the author, including concerns about dual publication, research ethics, or publication ethics. (Please upload your review as an attachment if it exceeds 20,000 characters)

Reviewer #1: (No Response)

**********

7. PLOS authors have the option to publish the peer review history of their article (what does this mean?). If published, this will include your full peer review and any attached files.

If you choose “no”, your identity will remain anonymous but your review may still be made public.

Do you want your identity to be public for this peer review? For information about this choice, including consent withdrawal, please see our Privacy Policy.

Reviewer #1: No

Acceptance letter

Isabelle Chemin

21 May 2021

PONE-D-20-39571R1

Prevalence of elevated liver transaminases and their relationship with alcohol use in people living with HIV on anti-retroviral therapy in Uganda

Dear Dr. Hahn:

I'm pleased to inform you that your manuscript has been deemed suitable for publication in PLOS ONE. Congratulations! Your manuscript is now with our production department.

If your institution or institutions have a press office, please let them know about your upcoming paper now to help maximize its impact. If they'll be preparing press materials, please inform our press team within the next 48 hours. Your manuscript will remain under strict press embargo until 2 pm Eastern Time on the date of publication. For more information please contact onepress@plos.org.

If we can help with anything else, please email us at plosone@plos.org.

Thank you for submitting your work to PLOS ONE and supporting open access.

Kind regards,

PLOS ONE Editorial Office Staff

on behalf of

Mrs Isabelle Chemin

Academic Editor

PLOS ONE

Associated Data

    This section collects any data citations, data availability statements, or supplementary materials included in this article.

    Supplementary Materials

    S1 File. Screening form used in the ADEPTT study.

    (PDF)

    Attachment

    Submitted filename: Response to Reviewers.docx

    Data Availability Statement

    Hahn, Judith (2021), Prevalence of elevated liver transaminases and their relationship with alcohol use in people living with HIV on anti-retroviral therapy in Uganda, Dryad, Dataset, https://doi.org/10.7272/Q66H4FPZ.


    Articles from PLoS ONE are provided here courtesy of PLOS

    RESOURCES