Table 2.
Primer sequences and RT-PCR conditions for Stag2, Poldip3, Madd and Smn transcript amplification.
| Transcript and size | Primer | Primer sequence | Temperature profile | |
|---|---|---|---|---|
| Stag2 | Exon 29 Fwd | GGCATGCAACTAGCACTCC | 55 °C 30 min | |
| + 30b 346 bp | Exon 32 Rev | CTTCCATTAGGCTTGTACCACG | 94 °C 2 min | |
| Δ30b 235 bp | 94 °C 40 s | |||
| 55 °C 30 s | 28 cycles | |||
| 68 °C 1 min | ||||
| Poldip3 | Exon 2 Fwd | CCGGTTTCGGATCAAAGGGA | 55 °C 30 min | |
| FL 349 bp | Exon 4 Rev | CATCTGCTTGGGAGGGACAG | 94 °C 2 min | |
| Δ3 260 bp | 94 °C 40 s | |||
| 55 °C 30 s | 30 cycles | |||
| 68 °C 1 min | ||||
| Madd | Exon 27 Fwd | CTGCGTGGTGTTGCGTAGTA | 55 °C 30 min | |
| FL 349 bp | Exon 30/31 | GAAAACCTTCCGCTCCTGGTTG | 94 °C 2 min | |
| Rev | 94 °C 40 s | |||
| 55 °C 30 s | 32 cycles | |||
| 68 °C 1 min | ||||
| Smn | Exon 4 Fwd | GAAAGTCAAGTTTCCACAGACG | 55 °C 30 min | |
| FL 430 bp | Exon 8 Rev | CACCCCATCTCCTGAGACAGAGC | 94 °C 2 min | |
| 94 °C 40 s | ||||
| 60 °C 30 s | 28 cycles | |||
| 68 °C 1 min | ||||