Table 3.
Results of the multiplex PCR for the detection of 73 strains.
Strain ID | Source | Results by hsp60 typing or MS | Results by the multiplex PCR |
---|---|---|---|
1 | Clinical sample | A. baumannii | N a |
2 | Clinical sample | E. hormaechei | EH |
3 | Clinical sample | A. baumannii | N |
4 | Clinical sample | K. pneumoniae | N |
5 | Clinical sample | K. pneumoniae | N |
6-3 | Sewage water | E. roggenkampii | ER |
5-6 | Sewage water | E. roggenkampii | ER |
8-4 | Sewage water | E. asburiae | N |
86 | Clinical sample | A. baumannii | N |
87 | Clinical sample | A. baumannii | N |
93 | Clinical sample | S. marcescens | N |
113 | Clinical sample | E. coli | N |
119 | Clinical sample | S. marcescens | N |
120 | Clinical sample | E. coli | N |
262 | Clinical sample | E. coli | N |
289 | Clinical sample | P. aeruginosa | N |
422 | Sewage water | E. kobei | EK |
430 | Clinical sample | F. meningosepticum | N |
435 | Clinical sample | F. meningosepticum | N |
436 | Clinical sample | F. meningosepticum | N |
437 | Clinical sample | K. pneumoniae | N |
438 | Clinical sample | K. pneumoniae | N |
439 | Clinical sample | K. pneumoniae | N |
689 | Animal feces | E. hormaechei | EH |
690 | Animal feces | E. hormaechei | EH |
695 | Clinical sample | P. aeruginosa | N |
981 | Sewage water | E. roggenkampii | ER |
982 | Sewage water | E. roggenkampii | ER |
983 | Sewage water | E. roggenkampii | ER |
1122 | Clinical sample | E. hormaechei | EH |
1123 | Clinical sample | E. hormaechei | EH |
1135 | Clinical sample | E. roggenkampii | ER |
1136 | Clinical sample | E. roggenkampii | ER |
1140 | Clinical sample | E. kobei | EK |
1146 | Clinical sample | E. roggenkampii | ER |
1166 | Clinical sample | E. asburiae | N |
1167 | Clinical sample | E. coli | N |
1187 | Sewage water | E. roggenkampii | ER |
1276 | Clinical sample | E. kobei | EK |
1277 | Clinical sample | E. kobei | EK |
1278 | Clinical sample | E. kobei | EK |
1279 | Clinical sample | E. roggenkampii | ER |
1280 | Clinical sample | E. roggenkampii | ER |
1281 | Clinical sample | E. roggenkampii | ER |
1282 | Clinical sample | E. kobei | EK |
1335 | Clinical sample | E. roggenkampii | ER |
1336 | Clinical sample | E. asburiae | N |
1337 | Clinical sample | E. kobei | EK |
1338 | Clinical sample | E. roggenkampii | ER |
1339b,c | Clinical sample | E. asburiae | N |
1340 c | Clinical sample | E. asburiae | N |
1341 | Clinical sample | E. kobei | EK |
1342 c | Clinical sample | E. asburiae | N |
1372 | Clinical sample | E. hormaechei | EH |
1377 | Clinical sample | E. hormaechei | EH |
1378 | Clinical sample | E. hormaechei | EH |
1379 | Clinical sample | E. roggenkampii | ER |
1380 | Clinical sample | E. roggenkampii | ER |
1381 | Clinical sample | E. hormaechei | EH |
1382 | Clinical sample | E. hormaechei | EH |
1383b,c | Clinical sample | E. asburiae | N |
1384 | Clinical sample | E. cloacae | EC |
1385 | Clinical sample | E. hormaechei | EH |
1386 | Clinical sample | E. hormaechei | EH |
1387 | Clinical sample | E. hormaechei | EH |
1388 | Clinical sample | E. hormaechei | EH |
1389 | Clinical sample | E. hormaechei | EH |
1390 | Clinical sample | E. hormaechei | EH |
8467 | Clinical sample | E. kobei | EK |
12740 c | Clinical sample | E. asburiae | N |
6069 c | Clinical sample | E. asburiae | N |
6530 | Clinical sample | E. hormaechei | EH |
9636 | Clinical sample | E. asburiae | N |
N, Negative.
Strains were sequenced by WGS.
The hsp60 sequences of strains clustered together without any of type sequences.