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Training and validation datasets prepared from the loci in Table 1
| Cell lines | Training | Validation (pos/neg) | |
|---|---|---|---|
| Labeled (pos/neg) | Unlabeled (pos/neg) | ||
| Lymphoblastoid (GM12878) | 550 (275/275) | 2606 (272/2,334) | 272 (136/136) |
| Liver carcinoma (HepG2) | 450 (225/225) | 1297 (197/1,103) | 208 (104/104) |
| Erythroleukemia (K562) | 350 (175/175) | 1210 (97/1,113) | 136 (168/168) |
pos a positive locus affecting gene expression, neg a negative locus showing no effect
