Table 4.
The top ranked docking scores of the compounds into Pks13 enzyme, and their top free binding energy scores, along with the relative docking (RD) score of the most active compounds (3a and 3d).
Compounds | Docking Scores (Pks13) |
MIC (µg/ml) |
|||||||||||
---|---|---|---|---|---|---|---|---|---|---|---|---|---|
Index | Name | LS1 | LS2 | −PLP1 | −PLP2 | Jain | −PMF | −PMF04 | −CDE | −CDIE | TBE | HRv | MDR |
1 | 3a | 4.1 | 6.55 | 103.24 | 100.61 | 1.97 | 134.25 | 63.43 | 27.205 | 46.07 | −12.47 | 8 | 16 |
2 | 3b | 5.11 | 6.62 | 117.68 | 107.52 | 2.85 | 126.69 | 76.55 | 29.426 | 47.451 | −14.73 | 32 | 32 |
3 | 3c | 4.72 | 6.92 | 112.79 | 106.22 | 4.53 | 143.21 | 74.55 | 27.984 | 51.551 | −8.15 | 11 | NA |
4 | 3d | 5.17 | 6.94 | 121.61 | 109.44 | 4.42 | 138.38 | 100.74 | 29.526 | 49.428 | −17.05 | 8 | 32 |
5 | 3e | 4.87 | 7.09 | 125.76 | 116.1 | 4.26 | 122.99 | 79.43 | 36.391 | 53.449 | −20.64 | 32 | 128 |
6 | 3f | 3.74 | 6.87 | 125.62 | 110.37 | 2.35 | 118.28 | 75.77 | 31.371 | 49.573 | −6.19 | 128 | NA |
7 | 3g | 4.64 | 6.62 | 112.53 | 102.85 | 3.81 | 143.89 | 74.97 | 31.856 | 49 | −14.66 | 32 | NA |
8 | 3h | 3.97 | 6.9 | 119.25 | 107.77 | 2.64 | 133.66 | 71.53 | 30.655 | 49.581 | −28.07 | 64 | NA |
9 | 3i | 3.89 | 6.91 | 103.89 | 99.06 | 3.74 | 137.41 | 75.08 | 31.567 | 47.857 | −18.80 | 11.3 | NA |
Co-crystallized ligand | 5.25 | 7.01 | 133.07 | 129.46 | 6.87 | 106.85 | 80.85 | 27.53 | 56.49 | ||||
RD* score (3a) | 0.78 | 0.93 | 0.78 | 0.78 | 0.29 | 1.26 | 0.79 | 0.99 | 0.82 | ||||
RD score (3d) | 0.99 | 0.99 | 0.91 | 0.85 | 0.64 | 1.30 | 1.25 | 1.07 | 0.88 |
*RD score = compound’s score/redocked co-crystallized ligand score.