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. 2021 Jun 1;36(1):869–884. doi: 10.1080/14756366.2021.1900162

Table 4.

The top ranked docking scores of the compounds into Pks13 enzyme, and their top free binding energy scores, along with the relative docking (RD) score of the most active compounds (3a and 3d).

Compounds Docking Scores (Pks13)
MIC (µg/ml)
Index Name LS1 LS2 −PLP1 −PLP2 Jain −PMF −PMF04 −CDE −CDIE TBE HRv MDR
1 3a 4.1 6.55 103.24 100.61 1.97 134.25 63.43 27.205 46.07 −12.47 8 16
2 3b 5.11 6.62 117.68 107.52 2.85 126.69 76.55 29.426 47.451 −14.73 32 32
3 3c 4.72 6.92 112.79 106.22 4.53 143.21 74.55 27.984 51.551 −8.15 11 NA
4 3d 5.17 6.94 121.61 109.44 4.42 138.38 100.74 29.526 49.428 −17.05 8 32
5 3e 4.87 7.09 125.76 116.1 4.26 122.99 79.43 36.391 53.449 −20.64 32 128
6 3f 3.74 6.87 125.62 110.37 2.35 118.28 75.77 31.371 49.573 −6.19 128 NA
7 3g 4.64 6.62 112.53 102.85 3.81 143.89 74.97 31.856 49 −14.66 32 NA
8 3h 3.97 6.9 119.25 107.77 2.64 133.66 71.53 30.655 49.581 −28.07 64 NA
9 3i 3.89 6.91 103.89 99.06 3.74 137.41 75.08 31.567 47.857 −18.80 11.3 NA
Co-crystallized ligand 5.25 7.01 133.07 129.46 6.87 106.85 80.85 27.53 56.49      
RD* score (3a) 0.78 0.93 0.78 0.78 0.29 1.26 0.79 0.99 0.82      
RD score (3d) 0.99 0.99 0.91 0.85 0.64 1.30 1.25 1.07 0.88      

*RD score = compound’s score/redocked co-crystallized ligand score.