Table 1.
Window size | Number of ILS segments | Percentage of ILS | Total ILSa | Genomic properties | ||||||
---|---|---|---|---|---|---|---|---|---|---|
(G, ((B, H), C)) | (G, ((H, C), B)) | (G, ((B, H), C)) | (G, ((H, C), B)) | GCa | Intergenic/intragenic | Alua | L1a | Exona | ||
20 kb | 218 | 218 | 0.19 | 0.19 | 0.38 | 37.7 | 1.79 | 6.37 | 31.44 | 0.49 |
10 kb | 1,143 | 1,138 | 0.49 | 0.48 | 0.97 | 38.39 | 1.73 | 7.35 | 27.08 | 0.47 |
5 kb | 4,314 | 4,373 | 0.91 | 0.92 | 1.83 | 38.95 | 1.64 | 7.85 | 24.67 | 0.58 |
2 kb | 18,218 | 18,334 | 1.52 | 1.53 | 3.05 | 39.58 | 1.49 | 8.71 | 21.51 | 0.72 |
1 kb | 46,584 | 46,938 | 2.06 | 2.07 | 4.13 | 40.06 | 1.37 | 9.8 | 19.85 | 0.8 |
500 bp | 102,197 | 103,338 | 2.52 | 2.55 | 5.07 | 40.54 | 1.33 | 11.24 | 18.66 | 0.75 |
Genome average | 40.89 | 1.21 | 10.17 | 17.42 | 1.17 |
B, bonobo; C, chimpanzee; G, gorilla; H, human. (G, ((B, H), C)) and (G, ((H, C), B)) represent two different ILS topologies. Intergenic/intragenic indicates the intergenic to intragenic ratio.
aContent is shown as a percentage; the GC, Alu, L1 and exon contents are based on the GRCh38 genome.