Table 1.
Top ten species in three sample types by BGISEQ-500
| Top ten species | Number of unique reads(n) | ||
|---|---|---|---|
| BALF | Sputum | Blood | |
| Chlamydia psittacia | 39,385 | 30,320 | 14,478 |
| Propionibacterium acnesa | 64 | 59 | 171 |
| Stenotrophomonas maltophiliaa | 54 | 102 | 150 |
| Chlamydia abortus | 46 | 23 | / |
| Klebsiella pneumoniaea | 29 | 22 | 24 |
| Salmonella entericaa | 27 | 56 | 43 |
| Pseudomonas aeruginosaa | 20 | 16 | 29 |
| Moraxella osloensisa | 17 | 9 | 26 |
| Micrococcus luteus | 10 | 8 | / |
| Escherichia colia | 8 | 10 | 50 |
| Enterococcus faecium | / | / | 11 |
| Staphylococcus epidermidis | / | / | 11 |
aindicates species that were detected in all three sample types. “/” indicates species that were not among the top ten species of the corresponding sample