TABLE 1.
Mycobacterial/Mycobacterium tuberculosis complex (MTBC) genes or gene regions targeted by Deeplex Myc-TB
| Target | Genome position | Gene position | Codons |
| rpoB1 | 760 957–761 355 | 1151–1549 | 384–517 |
| rpoB2 | 760 280–760 812 | 474–1006 | 158–336 |
| inhA | 1 674 287–1 674 880 | 86–679 | 29–227 |
| fabG1 | 1 673 321–1 673 755 | −119–316 | NA–106 |
| katG | 2 155 858–2 155 140 | 254–972 | 85–324 |
| ahpC | 2 726 030–2 726 585 | −163–393 | NA–131 |
| pncA | 2 289 301–2 288 672 | −60– +9 | Full CDS |
| embB | 4 247 376–4 248 065 | 863–1552 | 288–518 |
| gidB | 4 408 185–4 407 411 | 18– +117 | 6–NA |
| rpsL | 781 536–781 979 | −24– +45 | Full CDS |
| rrs1 | 1 472 561–1 473 417 | 716–1572 | NA |
| rrs2 | 1 471 848–1 472 524 | 3–679 | NA |
| eis | 2 715 528–2 715 171 | −196–162 | NA–54 |
| tlyA | 1 917 811–1 918 750 | −129– +4 | Full CDS |
| gyrA | 7377–7754 | 76–453 | 26–151 |
| gyrB | 6298–6943 | 1059–1704 | 353–568 |
| ethA | 4 327 482–4 325 951 | −9– +53 | Full CDS |
| rplC | 801 108–801 483 | 300– +21 | 100–NA |
| rrl | 1 475 923–1 476 625 | 2266–2968 | NA |
| Rv0678 | 778 976–779 539 | −14– +52 | Full CDS |
| hsp65 | 528 772–529 172 | 165–565 | 55–189 |
CDS: coding sequence; NA: not applicable for codons (positions outside a CDS, or in rrs or rrl rDNA regions). Positions of the reference sequences relative to the genome and genes of the M. tuberculosis H37Rv strain are indicated. Genome positions are indicated according to forward or reverse orientations of corresponding genes. For gene positions, minus (–) or plus (+) signs indicate positions in promoter or 3′ regions relative to the +1 or last nucleotide of CDSs, respectively.