TABLE 2.

Databases implemented in the Deeplex Myc-TB web application for mycobacterial species identification, Mycobacterium tuberculosis complex (MTBC) genotyping, and drug susceptibility and drug resistance prediction

Database use	Database name	Reference
Species identification	hsp65	[23]
Spoligotyping	SITVITWEB	[24]
Lineage identification	Coll	[25]
	PhyResSE	[20]
	Walker	[3]
Drug resistance prediction#	Miotto	[26]
	PhyResSE	[20]
	Walker	[3]
	ReSeqTB	[27]

^#: priority is given to the collaborative, curated database ReSeqTB when detected variants are known to this database.